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chore(main): release 9.13.5#3818

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johanneskoester merged 1 commit intomainfrom
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Nov 4, 2025
Merged

chore(main): release 9.13.5#3818
johanneskoester merged 1 commit intomainfrom
release-please--branches--main

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@snakemake-bot snakemake-bot commented Oct 29, 2025

🤖 I have created a release beep boop

9.13.5 (2025-11-04)

Bug Fixes

  • cache wrapper files and wait for them in case of shared filesystem for sources (#3809) (498fff7)
  • correctly handle meta-wrapper tag replacement depending on the used snakemake-wrapper release (#3826) (8d46a4a)
  • ensure that flags are properly considered for input files before applying path modifiers (i.e. default storage providers) (#3813) (d3bfe32)
  • ensure that tokens are not leaked when paths or uris of source files are logged (#3821) (a217e50)
  • print secs as numeric in jsonl benchmark format (#3814) (395a5e6)
  • revert breaking change in 9.11.9 disallowing empty input files even when unused (#3810) (83c05cc)
  • shorten report ids (thus dir names) in order to avoid issues with path length on windows (#3822) (b24d971)

This PR was generated with Release Please. See documentation.

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coderabbitai Bot commented Oct 29, 2025

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@snakemake-bot snakemake-bot force-pushed the release-please--branches--main branch 5 times, most recently from 17f3a14 to 25ae776 Compare November 4, 2025 13:02
@snakemake-bot snakemake-bot force-pushed the release-please--branches--main branch from 25ae776 to 947b385 Compare November 4, 2025 14:40
@johanneskoester johanneskoester merged commit 9bad1c7 into main Nov 4, 2025
57 of 58 checks passed
@johanneskoester johanneskoester deleted the release-please--branches--main branch November 4, 2025 14:42
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🤖 Created releases:

🌻

kjohnsen pushed a commit to kjohnsen/snakemake that referenced this pull request Dec 15, 2025
🤖 I have created a release *beep* *boop*
---


##
[9.13.5](snakemake/snakemake@v9.13.4...v9.13.5)
(2025-11-04)


### Bug Fixes

* cache wrapper files and wait for them in case of shared filesystem for
sources ([snakemake#3809](snakemake#3809))
([498fff7](snakemake@498fff7))
* correctly handle meta-wrapper tag replacement depending on the used
snakemake-wrapper release
([snakemake#3826](snakemake#3826))
([8d46a4a](snakemake@8d46a4a))
* ensure that flags are properly considered for input files before
applying path modifiers (i.e. default storage providers)
([snakemake#3813](snakemake#3813))
([d3bfe32](snakemake@d3bfe32))
* ensure that tokens are not leaked when paths or uris of source files
are logged ([snakemake#3821](snakemake#3821))
([a217e50](snakemake@a217e50))
* print secs as numeric in jsonl benchmark format
([snakemake#3814](snakemake#3814))
([395a5e6](snakemake@395a5e6))
* revert breaking change in 9.11.9 disallowing empty input files even
when unused
([snakemake#3810](snakemake#3810))
([83c05cc](snakemake@83c05cc))
* shorten report ids (thus dir names) in order to avoid issues with path
length on windows
([snakemake#3822](snakemake#3822))
([b24d971](snakemake@b24d971))

---
This PR was generated with [Release
Please](https://github.com/googleapis/release-please). See
[documentation](https://github.com/googleapis/release-please#release-please).
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