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base repository: snakemake/snakemake
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base: v8.23.1
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head repository: snakemake/snakemake
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compare: v8.23.2
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  • 4 commits
  • 5 files changed
  • 3 contributors

Commits on Oct 17, 2024

  1. docs: Fix missing spaces in CLI help text (#3146)

    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [ ] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [ ] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    
    
    <!-- This is an auto-generated comment: release notes by coderabbit.ai
    -->
    
    ## Summary by CodeRabbit
    
    - **New Features**
    	- Enhanced command-line argument parser for improved user experience.
      
    - **Bug Fixes**
    	- Refined error messages for better clarity during logging issues.
    
    - **Documentation**
    - Updated help descriptions for command-line options for clarity and
    consistency.
    
    - **Style**
    - Improved formatting and readability of argument definitions and code
    structure.
    
    <!-- end of auto-generated comment: release notes by coderabbit.ai -->
    peterjc authored Oct 17, 2024
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  2. fix: more robust handling of input metadata that avoids storing user …

    …or typoe specific local paths, and properly handles pipe or service files (#3150)
    
    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    
    
    <!-- This is an auto-generated comment: release notes by coderabbit.ai
    -->
    
    ## Summary by CodeRabbit
    
    - **New Features**
    - Updated record format version to enhance how records are managed and
    interpreted.
    	- Improved input path handling for better clarity and functionality.
    
    - **Bug Fixes**
    - Ensured compatibility with the new record format version for input
    change detection.
    
    - **Documentation**
    - Enhanced metadata tracking to include the new record format version
    across job outputs.
    
    <!-- end of auto-generated comment: release notes by coderabbit.ai -->
    johanneskoester authored Oct 17, 2024
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Commits on Oct 18, 2024

  1. fix: ignore derived parameters when storing job metadata and inferrin…

    …g rerun necessity of jobs (this gets rid of spurious triggers caused by e.g. changed resources, threads, remote storage configuration) (#3154)
    
    <!--Add a description of your PR here-->
    
    ### QC
    <!-- Make sure that you can tick the boxes below. -->
    
    * [x] The PR contains a test case for the changes or the changes are
    already covered by an existing test case.
    * [x] The documentation (`docs/`) is updated to reflect the changes or
    this is not necessary (e.g. if the change does neither modify the
    language nor the behavior or functionalities of Snakemake).
    
    
    <!-- This is an auto-generated comment: release notes by coderabbit.ai
    -->
    
    ## Summary by CodeRabbit
    
    - **New Features**
    - Enhanced parameter management in the Job class for better handling of
    non-derived parameters.
    - Improved input function handling in the Rule class, allowing for
    differentiation between derived and non-derived parameters.
    
    - **Bug Fixes**
    - Updated methods in the Persistence class to ensure type safety and
    clarity.
    
    - **Documentation**
    - Added type hints to method signatures for improved code understanding.
    
    <!-- end of auto-generated comment: release notes by coderabbit.ai -->
    johanneskoester authored Oct 18, 2024
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  2. chore(main): release 8.23.2 (#3149)

    🤖 I have created a release *beep* *boop*
    ---
    
    
    ##
    [8.23.2](v8.23.1...v8.23.2)
    (2024-10-18)
    
    
    ### Bug Fixes
    
    * ignore derived parameters when storing job metadata and inferring
    rerun necessity of jobs (this gets rid of spurious triggers caused by
    e.g. changed resources, threads, remote storage configuration)
    ([#3154](#3154))
    ([73ce212](73ce212))
    * more robust handling of input metadata that avoids storing user or
    typoe specific local paths, and properly handles pipe or service files
    ([#3150](#3150))
    ([756dc70](756dc70))
    
    
    ### Documentation
    
    * Fix missing spaces in CLI help text
    ([#3146](#3146))
    ([6416c36](6416c36))
    
    ---
    This PR was generated with [Release
    Please](https://github.com/googleapis/release-please). See
    [documentation](https://github.com/googleapis/release-please#release-please).
    
    Co-authored-by: github-actions[bot] <41898282+github-actions[bot]@users.noreply.github.com>
    github-actions[bot] authored Oct 18, 2024
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