Merge branch 'main' into checksums

johannaschmitz · web-flow · commit 90150c8cca4a · 2025-03-11T14:16:57.000+01:00
diff --git a/snakemake/cli.py b/snakemake/cli.py
@@ -1375,7 +1375,7 @@ def get_argument_parser(profiles=None):
     group_behavior.add_argument(
         "--keep-storage-local-copies",
         action="store_true",
-        help="Keep local copies of remote input files.",
+        help="Keep local copies of remote input and output files.",
     )
     group_behavior.add_argument(
         "--target-files-omit-workdir-adjustment",
diff --git a/snakemake/workflow.py b/snakemake/workflow.py
@@ -1291,7 +1291,8 @@ def execute(
 
             if not dryrun_or_touch:
                 async_run(self.dag.store_storage_outputs())
-                async_run(self.dag.cleanup_storage_objects())
+                if not self.storage_settings.keep_storage_local:
+                    async_run(self.dag.cleanup_storage_objects())
 
             if success:
                 if self.dryrun:

Original file line number	Diff line number	Diff line change
`@@ -1375,7 +1375,7 @@ def get_argument_parser(profiles=None):`
`1375`	`1375`	`group_behavior.add_argument(`
`1376`	`1376`	`"--keep-storage-local-copies",`
`1377`	`1377`	`action="store_true",`
`1378`		`- help="Keep local copies of remote input files.",`
	`1378`	`+ help="Keep local copies of remote input and output files.",`
`1379`	`1379`	`)`
`1380`	`1380`	`group_behavior.add_argument(`
`1381`	`1381`	`"--target-files-omit-workdir-adjustment",`