Fix tests

fgvieira · fgvieira · commit 86a30552cb3c · 2025-12-10T11:48:28.000+01:00
diff --git a/tests/tests.py b/tests/tests.py
@@ -1318,9 +1318,7 @@ def test_tmpdir():
     # workflow profile is loaded by default
     run(
         test_path,
-        snakefile="Snakefile",
-        shellcmd=f"snakemake --profile {general_profile} -c1",
-        overwrite_resources={"a": {"tmpdir": "/tmp"}},
+        shellcmd=f"snakemake -c1 --profile {general_profile} --set-resources 'a:tmpdir=/tmp'",
     )
 
 

Original file line number	Diff line number	Diff line change
`@@ -1318,9 +1318,7 @@ def test_tmpdir():`
`1318`	`1318`	`# workflow profile is loaded by default`
`1319`	`1319`	`run(`
`1320`	`1320`	`test_path,`
`1321`		`- snakefile="Snakefile",`
`1322`		`- shellcmd=f"snakemake --profile {general_profile} -c1",`
`1323`		`- overwrite_resources={"a": {"tmpdir": "/tmp"}},`
	`1321`	`+ shellcmd=f"snakemake -c1 --profile {general_profile} --set-resources 'a:tmpdir=/tmp'",`
`1324`	`1322`	`)`
`1325`	`1323`
`1326`	`1324`