Hi

Thanks for building snakefmt. I just tried it with one repo and I have an issue.

More specifically I tried the following:

Install snakefmt via conda:

conda create -n snakefmt -c bioconda -c conda-forge snakefmt=0.4.1

Activate the virtual environment

conda activate snakefmt

Clone the dev branch of the following repo and enter the directory

git clone -b dev https://git.scicore.unibas.ch/zavolan_group/pipelines/zarp.git
cd zarp

Run snakefmt as following:

snakefmt workflow/

Then I get the following message:

IndexError: list index out of range

I don't know if I am doing something wrong or if it is a problem of snakefmt.

Thank you in advance for your help!