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[r] Data refresh for new shapes#3303

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johnkerl merged 5 commits intomainfrom
kerl/r-data-refresh
Nov 7, 2024
Merged

[r] Data refresh for new shapes#3303
johnkerl merged 5 commits intomainfrom
kerl/r-data-refresh

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@johnkerl johnkerl commented Nov 7, 2024

Issue and/or context: As tracked on issue #2407 / [sc-51048].

Note that the intended Python and R API changes are all agreed on and finalized as described in #2407.

Changes:

  • Regenerate data in the inst/extdata directory to have new-style shapes -- primarily for the benefit of vignettes on [r] Vignette for new-shape feature #3302.
  • Add a missing script for regenerating one of the two datasets
  • Add README.md for the benefit of future maintainers

Notes for Reviewer:

@johnkerl johnkerl force-pushed the kerl/r-data-refresh branch 2 times, most recently from 4adb36e to 73a6858 Compare November 7, 2024 15:18
@johnkerl johnkerl force-pushed the kerl/r-data-refresh branch from 73a6858 to d52e2fe Compare November 7, 2024 15:20
@johnkerl johnkerl marked this pull request as ready for review November 7, 2024 15:21
@johnkerl johnkerl changed the title [r] Doc-data refresh for new shapes [r] Data refresh for new shapes Nov 7, 2024
@johnkerl johnkerl force-pushed the kerl/r-data-refresh branch from ad15833 to 8130dc4 Compare November 7, 2024 16:20
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@mojaveazure mojaveazure left a comment

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So it seems the original pbmc3k-processed-obs was from Scanpy, not Seurat (based on the column name changes in test-SOMAArrayReader-Arrow.R and test-SOMADataFrame.R; I've got one comment about a missing README entry

Comment thread apis/r/tests/testthat/test-example-datasets.R
@johnkerl johnkerl requested a review from mojaveazure November 7, 2024 17:03
@johnkerl johnkerl merged commit 9d93ac3 into main Nov 7, 2024
@johnkerl johnkerl deleted the kerl/r-data-refresh branch November 7, 2024 17:27
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2 participants