[python] Re-run, and update, example notebooks with new shape feature#3290
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[python] Re-run, and update, example notebooks with new shape feature#3290
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This was referenced Nov 4, 2024
nguyenv
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Converting to draft while I rework the data storage on a separate PR |
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@aaronwolen re-requesting review as this is now rebased on top of #3295 (which has been merged). |
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* Geometry dataframe implementation, use spatial axes when available when creating schema * Address PR review comments
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aaronwolen
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Issue and/or context: As tracked on issue #2407 / [sc-51048].
Note that the intended Python and R API changes are all agreed on and finalized as described in #2407.
Changes:
Re-execute our notebooks with the new-shape feature. Change the wording in many places to remove needless complexities from the pre-shape era.
This PR affects existing notebooks. There is a separate PR with a new notebook dedicated to the new shape feature: #3294.
Notes for Reviewer:
This PR was run on a system with core
dev(2.27-to-be) installed on it.Handy review link with rendered notebooks:
https://github.com/single-cell-data/TileDB-SOMA/tree/kerl/notebook-new-shape-refresh/apis/python/notebooks