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[python/r] Use pushdown domainish accessors at the Python/R UX level#3027

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johnkerl merged 9 commits intomainfrom
kerl/hll-domainish
Sep 27, 2024
Merged

[python/r] Use pushdown domainish accessors at the Python/R UX level#3027
johnkerl merged 9 commits intomainfrom
kerl/hll-domainish

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@johnkerl johnkerl commented Sep 21, 2024

Issue and/or context: As tracked on issue #2407 / [sc-51048].

See also [sc-55659].

Note that the intended Python and R API changes are all agreed on and finalized as described in #2407.

Changes:

Following #3012 we can now connect tiledbsoma-py to use the full domainish accessors from libtiledbsoma.

Notes for Reviewer:

R mods to come on this same PR.

This PR is a work in progress. It is not ready for review.

@johnkerl johnkerl changed the title [python] Use pushdown domainish accessors at the Python UX level [python/r] Use pushdown domainish accessors at the Python/R UX level Sep 21, 2024
@johnkerl johnkerl marked this pull request as draft September 21, 2024 04:10
@johnkerl johnkerl force-pushed the kerl/hll-domainish branch 5 times, most recently from 47c1b25 to 8cbcf91 Compare September 22, 2024 03:08
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codecov Bot commented Sep 22, 2024

Codecov Report

All modified and coverable lines are covered by tests ✅

Please upload report for BASE (kerl/cpp-sdf-domain-at-create@e614221). Learn more about missing BASE report.

Additional details and impacted files
@@                       Coverage Diff                        @@
##             kerl/cpp-sdf-domain-at-create    #3027   +/-   ##
================================================================
  Coverage                                 ?   49.62%           
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  Files                                    ?       57           
  Lines                                    ?     8890           
  Branches                                 ?      819           
================================================================
  Hits                                     ?     4412           
  Misses                                   ?     4278           
  Partials                                 ?      200           
Flag Coverage Δ
libtiledbsoma 49.62% <ø> (?)

Flags with carried forward coverage won't be shown. Click here to find out more.

Components Coverage Δ
python_api ∅ <0.00%> (?)
libtiledbsoma 48.60% <0.00%> (?)

@johnkerl johnkerl force-pushed the kerl/hll-domainish branch 8 times, most recently from 0557481 to ef401e1 Compare September 25, 2024 04:57
@johnkerl johnkerl marked this pull request as ready for review September 25, 2024 04:59
Comment thread apis/r/R/SOMADataFrame.R
Comment thread apis/r/R/utils-arrow.R Outdated
Comment thread apis/r/R/utils-arrow.R Outdated
Comment thread apis/r/tests/testthat/test-shape.R Outdated
Comment thread apis/r/tests/testthat/test-shape.R Outdated
Comment thread apis/r/tests/testthat/test-shape.R Outdated
Comment thread apis/r/tests/testthat/test-shape.R Outdated
Comment thread apis/r/tests/testthat/test-shape.R
@johnkerl johnkerl changed the base branch from main to kerl/cpp-sdf-domain-at-create September 25, 2024 23:42
@johnkerl johnkerl force-pushed the kerl/cpp-sdf-domain-at-create branch from 9574fe7 to e614221 Compare September 25, 2024 23:50
@johnkerl johnkerl force-pushed the kerl/cpp-sdf-domain-at-create branch from e614221 to bcc51f3 Compare September 26, 2024 03:10
@johnkerl johnkerl force-pushed the kerl/hll-domainish branch 2 times, most recently from b00406e to a09f6bd Compare September 26, 2024 03:55
@johnkerl johnkerl force-pushed the kerl/cpp-sdf-domain-at-create branch from 235e699 to 74c7f15 Compare September 26, 2024 13:32
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LGTM on the R-side; will defer to other for Python. Before merging, please bump the develop version and update the changelog

@johnkerl johnkerl force-pushed the kerl/cpp-sdf-domain-at-create branch from 74c7f15 to be66574 Compare September 27, 2024 00:39
Comment thread apis/python/src/tiledbsoma/_tdb_handles.py
Comment thread apis/python/src/tiledbsoma/_tdb_handles.py
@johnkerl johnkerl force-pushed the kerl/cpp-sdf-domain-at-create branch from be66574 to a40f130 Compare September 27, 2024 01:55
Base automatically changed from kerl/cpp-sdf-domain-at-create to main September 27, 2024 02:03
@johnkerl johnkerl merged commit 919cc34 into main Sep 27, 2024
@johnkerl johnkerl deleted the kerl/hll-domainish branch September 27, 2024 13:14
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3 participants