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An open and interoperable data framework for spatial omics data

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Work in progress ⚠

  • To get involved in the discussion you are welcome to join our Zulip workspace and/or our community meetings every second week; more info here.
  • This repository doesn't contain the latest version of the code; we aim at a beta release in the following months. If interested in a demo/early beta, please reach out to us.
  • Links to the OME-NGFF specification: 0.4, 0.5-dev (tables), 0.5-dev (transformations and coordinate systems)

spatialdata

Tests pre-commit.ci status codecov

Up-to-date design doc here

Getting started

coming soon

Installation

Check out the docs for more complete installation instructions. For now you can install spatialdata with:

pip install git+https://github.com/scverse/spatialdata.git@main

Contact

For questions and help requests, you can reach out in the scverse discourse. If you found a bug, please use the issue tracker.

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About

An open and interoperable data framework for spatial omics data

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410 stars

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