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Spatial keys are ignored by adataosbm in spaitaldata as it was a legacy from squidpy (we may change this). In your case it seems that the table is not linked to the spatial observation. Can you plot features from the table on the shapes?
To help understand the issue please provide more information on the SpatialData object and ideally a copy-pasteable reproducible example.
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LucaMarconato commentedon Dec 29, 2025
Spatial keys are ignored by
adataosbminspaitaldataas it was a legacy fromsquidpy(we may change this). In your case it seems that the table is not linked to the spatial observation. Can you plot features from the table on the shapes?To help understand the issue please provide more information on the
SpatialDataobject and ideally a copy-pasteable reproducible example.