about Interactive(sdata) #344

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1. szy23333 commented on Jan 21, 2025

   

   szy23333

   on Jan 21, 2025

   Author

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   Why are there no images in the interactive interface?
2. timtreis

   transferred this issue fromscverse/squidpyon Jan 29, 2025
3. LucaMarconato commented on Jan 30, 2025

   

   LucaMarconato

   on Jan 30, 2025

   Member

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   Hi @szy23333, please select the coordinate system global, and then double click on the images you would like to visualize. This can be automated programmatically as shown in the code below:

   from napari_spatialdata import Interactive
   
   interactive = Interactive(sdata, headless=True)
   interactive.add_element(f"rasterized_002um", "global", view_element_system=True)
   interactive.run()

   which is taken from this notebook . Please find more details there.

   Also please check the documentation notebooks for napari-spatialdata here: https://spatialdata.scverse.org/projects/napari/en/latest/notebooks/spatialdata.html.