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Description
Trying to install scikit-learn 0.21 from source in a clean venv fails.
Steps/Code to Reproduce
python -mvenv /tmp/tmpenv && source /tmp/tmpenv/bin/activate
pip install numpy
pip install --no-cache --no-binary=scikit-learn scikit-learn
Expected Results
scikit-learn is installed
Actual Results
Collecting scikit-learn
Downloading https://files.pythonhosted.org/packages/9b/94/a24da18837e32ae2d5275b18308a542ae07891617501336b31c81a383cad/scikit-learn-0.21.0.tar.gz (12.2MB)
100% |████████████████████████████████| 12.2MB 44.5MB/s
Requirement already satisfied: numpy>=1.11.0 in ./tmpenv/lib/python3.7/site-packages (from scikit-learn) (1.16.3)
Requirement already satisfied: scipy>=0.17.0 in ./tmpenv/lib/python3.7/site-packages (from scikit-learn) (1.2.1)
Requirement already satisfied: joblib>=0.11 in ./tmpenv/lib/python3.7/site-packages (from scikit-learn) (0.13.2)
Installing collected packages: scikit-learn
Running setup.py install for scikit-learn ... error
Complete output from command /tmp/tmpenv/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-7semrfib/scikit-learn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-96g5nwiz/install-record.txt --single-version-externally-managed --compile --install-headers /tmp/tmpenv/include/site/python3.7/scikit-learn:
Partial import of sklearn during the build process.
blas_opt_info:
blas_mkl_info:
customize UnixCCompiler
libraries mkl_rt not found in ['/tmp/tmpenv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
blis_info:
customize UnixCCompiler
libraries blis not found in ['/tmp/tmpenv/lib', '/usr/local/lib', '/usr/lib64', '/usr/lib', '/usr/lib/']
NOT AVAILABLE
openblas_info:
customize UnixCCompiler
customize UnixCCompiler
customize UnixCCompiler
FOUND:
libraries = ['openblas', 'openblas']
library_dirs = ['/usr/lib64']
language = c
define_macros = [('HAVE_CBLAS', None)]
FOUND:
libraries = ['openblas', 'openblas']
library_dirs = ['/usr/lib64']
language = c
define_macros = [('HAVE_CBLAS', None)]
Traceback (most recent call last):
File "<string>", line 1, in <module>
File "/tmp/pip-install-7semrfib/scikit-learn/setup.py", line 280, in <module>
setup_package()
File "/tmp/pip-install-7semrfib/scikit-learn/setup.py", line 276, in setup_package
setup(**metadata)
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/core.py", line 137, in setup
config = configuration()
File "/tmp/pip-install-7semrfib/scikit-learn/setup.py", line 171, in configuration
config.add_subpackage('sklearn')
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/misc_util.py", line 1036, in add_subpackage
caller_level = 2)
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/misc_util.py", line 1005, in get_subpackage
caller_level = caller_level + 1)
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/misc_util.py", line 942, in _get_configuration_from_setup_py
config = setup_module.configuration(*args)
File "sklearn/setup.py", line 53, in configuration
config.add_subpackage('ensemble/_hist_gradient_boosting/tests')
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/misc_util.py", line 1036, in add_subpackage
caller_level = 2)
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/misc_util.py", line 998, in get_subpackage
caller_level = caller_level+1)
File "/tmp/tmpenv/lib/python3.7/site-packages/numpy/distutils/misc_util.py", line 780, in __init__
raise ValueError("%r is not a directory" % (package_path,))
ValueError: 'sklearn/ensemble/_hist_gradient_boosting/tests' is not a directory
----------------------------------------
Command "/tmp/tmpenv/bin/python -u -c "import setuptools, tokenize;__file__='/tmp/pip-install-7semrfib/scikit-learn/setup.py';f=getattr(tokenize, 'open', open)(__file__);code=f.read().replace('\r\n', '\n');f.close();exec(compile(code, __file__, 'exec'))" install --record /tmp/pip-record-96g5nwiz/install-record.txt --single-version-externally-managed --compile --install-headers /tmp/tmpenv/include/site/python3.7/scikit-learn" failed with error code 1 in /tmp/pip-install-7semrfib/scikit-learn/
You are using pip version 19.0.3, however version 19.1.1 is available.
You should consider upgrading via the 'pip install --upgrade pip' command.
Versions
In [1]: import platform; print(platform.platform())
Linux-5.0.12-arch2-1-ARCH-x86_64-with-arch
In [2]: import sys; print("Python", sys.version)
Python 3.7.3 (default, Mar 26 2019, 21:43:19)
[GCC 8.2.1 20181127]
In [3]: import numpy; print("NumPy", numpy.__version__)
NumPy 1.16.3
In [4]: import scipy; print("SciPy", scipy.__version__)
SciPy 1.2.1
thomasjpfan