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06_ontology_plot

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06_ontology_plot

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output
output
 
 
test
test
 
 
README.md
README.md
 
 
eyes.py
eyes.py
 
 
params_eyes.py
params_eyes.py
 
 

README.md

plot ontology - eyes

is_this_a_test

  • set to True to run the test, see test/ for results

dir_output

  • any outputs will be stored here (including logs)
  • suggested to use output/ but users are welcome to create their own dir

ontology_file

  • the name of the .owl ontology, users should include filepath
  • ontologies should be in the OWL RDF/XML syntax

plot_type

  • choose web or tree (web is recommended)

*_colour

  • colours for superclass (default: orange) and subclass (default: skyblue)

to_annotate_subclasses

  • choose True or False to overlay text for subclasses in plots
  • recommended to use False if ontologies are large (text will be difficult to see as they may overlap)

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