update entities - arise

is_this_a_test

• set to True to run the test, see test/ for results

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dir_output

• any outputs will be stored here (including logs)
• suggested to use output/ but users are welcome to create their own dir

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ontology_file

• the name of the .owl ontology, users should include filepath
• ontologies should be in the OWL RDF/XML syntax

update_entities

• file of entities to update ontology, the order is important: new classes should be defined before metadata
• can be either .tsv or .csv
• users should open their ontology in a text editor to see how the tags are defined, e.g.

class	annotation	tag
eclipse	UFO_0045	rdfs:subClassOf
eclipse	darkening	UFO:hasSynonym

new_version

• update version of ontology, e.g. new_version="v2.0" (can leave empty if you don't wish to update')

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