Search results

Support for CellChatDB v2 in LIANA / OmniPath

Status: Open.

#204 In saezlab/liana;

· CharlineJnnt opened on Mar 16, 2026

Input data slot/type for liana_by_sample

Status: Open.

#203 In saezlab/liana;

· rbutleriii opened on Mar 7, 2026

multiple samples

Status: Open.

#202 In saezlab/liana;

· Dan-Danny-Danniel opened on Jan 15, 2026

using parallelize = TRUE dramatically slows down computation and leaves R processes behind

Status: Open.

#201 In saezlab/liana;

· doliv071 opened on Dec 18, 2025

Seurat v5 compatibility issue when running liana_wrap()

Status: Open.

#200 In saezlab/liana;

· ErickMUO opened on Dec 16, 2025

Question about inputs to build_prior_network()

Status: Open.

#198 In saezlab/liana;

· chrishklee opened on Jul 25, 2025

Does cell number matters for group comparison?

Status: Open.

#197 In saezlab/liana;

· mainyanghr opened on Jun 12, 2025

"liana_wrap" did not work. Need to be updated in corresponding to SeuratObject 5.0.0.

Status: Open.

#194 In saezlab/liana;

· rheupion opened on May 3, 2025

Cannot install package in R. Error: object ‘colMeans’ is not exported by 'namespace:MatrixGenerics'

Status: Open.

#193 In saezlab/liana;

· saumyapo opened on Apr 23, 2025

"outer_lr" option doesn't work for HOW parameter in liana_tensor_c2c()

Status: Open.

#192 In saezlab/liana;

· JamesJDollar opened on Apr 15, 2025

Estimate run time, ram, cpu required as a slurm job

Status: Open.

#191 In saezlab/liana;

· redbybeing opened on Apr 10, 2025

Will LIANA automatically find and use log-normalized data from Seurat object?

Status: Open.

#190 In saezlab/liana;

· redbybeing opened on Apr 10, 2025