[Bug]: advancedChunks(manualChunks) ignores the directory part of the name

### Reproduction link or steps

[REPL](https://repl.rolldown.rs/#eNqVUe1KwzAUfZVLENpqTTfxV2X+EQb+8QWWCbFNZzVNSppMYfTdvWnN1kFhGvqRnHvuvefkHkhF8gMxWspSfylaaFXVO/rReVSRfC6SkgID4rvVxkIpKu6khQNTANrZ1tl8PAA0XDkun96d+uziukwCDoDFOgtGSG7rvYAV1CU1opW8EHH2yljWmQK/WQpRlIQkI6wz6ph1SmCM0purKblPxz8v91wVohw1HIUB7Ix2LQKbAMAp5pfijcghrmopElg9ngdn9HviZQf/9jGu4OZ8v/3dBaTwHteo4wW1o7Vo401scWKRJ/RM4YPDEySvuOxEnxLUmDW8VpN5T6Fx0HUzDPoaeAdWoO3K6AYimnnPd778AzNM+ddfi8aLkHoXe2oyRMae1rjQMiROex6xS021LIUZ6M9qPRz+IiF0ns0+0zHPGFWRHuvscbOkC7q4fROW0/sl6X8A7IEEGw==)


### What is expected?

The output files to be:

- `main.js`
- `file2.js`
- `folder/fileInFolder.js`


### What is actually happening?

The output files are:

- `main.js`
- `file2.js`
- `main2.js`


### System Info

```Shell
1.0.0-beta.41
```

### Any additional comments?

Originally reported at https://github.com/vitejs/rolldown-vite/issues/429

Probably related to https://github.com/rolldown/rolldown/issues/4790


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[Bug]: advancedChunks(manualChunks) ignores the directory part of the name #6424

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[Bug]: advancedChunks(manualChunks) ignores the directory part of the name #6424

Description

Reproduction link or steps

What is expected?

What is actually happening?

System Info

Any additional comments?

Metadata

Metadata

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