quickblast

Script to create a BLAST database and quickly BLAST sequences against it.

Installation with uv

Install from this repository:

uv tool install git+https://github.com/reslp/quickblast.git

After installation, run:

quickblast -d database.fa -q query.fa

For protein databases:

quickblast -d database.fa -q query.fa -t prot

Use Singularity instead of Docker:

quickblast -s -d database.fa -q query.fa

Requirements

quickblast requires Docker or Singularity to run the BLAST container image.