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chore: Get rid of filename_md5 field on Reference #190

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@gjreda

In chatting with @cguedes, we decided this field isn't really necessary. For now, we can consider the source_filename to be the unique identifier of the paper, since the filesystem will require it to be unique anyway.

Longer term we should probably so something like a UUID or database primary key. @shauryr mentioned that S2 uses a SHA1 of the PDF as an identified, so we could also adopt similar.

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