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@petebankhead petebankhead commented Oct 11, 2024

  • Fix Complicated 'Polygon' ROIs can give different masks in ImageJ & QuPath #1674
  • Make the preferences persistent when sending a region to ImageJ]
  • Add "Non-rectangles only" as an option when sending ROIs to ImageJ, since rectangles tend to correspond to the entire image region... and do more harm than good.
  • Use Roi group names for classifications, where available
  • Rename setting the plugins directory to 'Set local ImageJ directory' - because it's needed also for LUTs as well

Note that setting the Roi group logs an error if the ImageJ directory isn't set, because it makes a request for the Glasbey LUT that can't be fulfilled.

Make the preferences persistent when sending a region to ImageJ.
Fixes qupath#1674
Also add "Non-rectangles only" as an option when sending ROIs to ImageJ, since rectangles tend to correspond to the entire image region... and do more harm than good.
Addresses qupath#1674
Don't convert a PolygonROI (QuPath) to a PolygonRoi (ImageJ) unless the polygon is simple (1 outer ring, no holes); instead, use a ShapeRoi for consistent results.
Several minor fixes, including
- use Roi group names for classifications, where available
- rename setting the plugins directory to 'Set local ImageJ directory' - because it's needed also for LUTs as well

Note that setting the Roi group logs an error if this hasn't been done, because it makes a request for the Glasbey LUT that can't be fulfilled.
@petebankhead petebankhead added this to the v0.6.0 milestone Oct 11, 2024
@petebankhead petebankhead merged commit cded17d into qupath:main Oct 11, 2024
@petebankhead petebankhead deleted the ij-improvements branch October 11, 2024 15:46
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Complicated 'Polygon' ROIs can give different masks in ImageJ & QuPath

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