Issues

• Automatic embedding fallback mutates the reference AnnData

  bug
  quadbio/cellmapper#92 · Filter by author Marius1311 opened on Nov 11, 2026

• Recomputing neighbors leaves a stale mapping matrix

  bug
  quadbio/cellmapper#91 · Filter by author Marius1311 opened on Nov 11, 2026

• FAISS backends return squared Euclidean distances, unlike other backends

  bugkernel
  quadbio/cellmapper#90 · Filter by author Marius1311 opened on Nov 11, 2026

• FAISS backends ignore the requested distance metric

  bug
  quadbio/cellmapper#89 · Filter by author Marius1311 opened on Nov 11, 2026

• CI: py3.14-pre fails — numba not yet compatible with numpy ≥2.4 (upstream)

  quadbio/cellmapper#78 · Filter by author Marius1311 opened on Jun 9, 2026

• Scaling CellMapper to 1B cells (out-of-core / lazy-loaded k-NN mapping)

  quadbio/cellmapper#73 · Filter by author Marius1311 opened on Jun 9, 2026

• Add support for JZ-Tree

  quadbio/cellmapper#70 · Filter by author Marius1311 opened on May 18, 2026

• Docs sometimes inconsistent

  bug
  quadbio/cellmapper#52 · Filter by author Marius1311 opened on Sep 3, 2025

• Add unknown category to label transfer

  enhancement
  quadbio/cellmapper#20 · Filter by author Marius1311 opened on May 2, 2025
  

• Implement the MSSI score

  enhancement
  quadbio/cellmapper#8 · Filter by author Marius1311 opened on Apr 29, 2025