normalized sdist names#6621
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#6714 was a little more correct overall in doing the bump all at once and solving the deprecation warnings -- however, this PR does have slightly more correct use of |
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I've left in the noise where we took equivalent-but-different decisions because I am too lazy to change such things, if you care then feel free to update |
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dlaehnemann
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Mar 20, 2023
… underscores) The official specs for sdist file names require that the package name is in snake case, see these places: * https://peps.python.org/pep-0625/#specification * https://packaging.python.org/en/latest/specifications/binary-distribution-format/#escaping-and-unicode * https://peps.python.org/pep-0491/#escaping-and-unicode [`poetry` switched to conforming to these specs with version `1.2.2`](https://github.com/python-poetry/poetry/releases/tag/1.2.2), see: * poetry-core pull request with the actual code changes: python-poetry/poetry-core#484 * poetry pull request pulling them in: python-poetry/poetry#6621 Thus, all (bio-)conda recipes whose sources are built with `poetry` and uploaded to pypi are likely to face the same issue. As `snakemake-wrapper-utils` only contains hyphens (`-`) as non-word characters, the suggested `replace("-","_")` should be safe and enough. But a thorough solution should be implemented in `grayskull` (that does conda recipe templating for pypi packages), and in the tooling of `conda-forge` and `bioconda`. One solution to make such recipes more future-proof would be to make tooling respect the [official guidance to query the pypi JSON API to get download urls](https://warehouse.pypa.io/api-reference/integration-guide.html#official-guidance). Examples of how to do this are here: * [stackoverflow answer with example code of querying the pypi JSON API for a download URL](https://stackoverflow.com/a/48327216) * [link to the pypi code for generating the currently used standardized redirect links at `pypi.io`, that also uses the JSON API](pypi/warehouse#13240 (comment))
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* update snakemake-wrapper-utils to 0.5.2 * make package name in sdist `.tar.gz` filename conform to specs (using underscores) The official specs for sdist file names require that the package name is in snake case, see these places: * https://peps.python.org/pep-0625/#specification * https://packaging.python.org/en/latest/specifications/binary-distribution-format/#escaping-and-unicode * https://peps.python.org/pep-0491/#escaping-and-unicode [`poetry` switched to conforming to these specs with version `1.2.2`](https://github.com/python-poetry/poetry/releases/tag/1.2.2), see: * poetry-core pull request with the actual code changes: python-poetry/poetry-core#484 * poetry pull request pulling them in: python-poetry/poetry#6621 Thus, all (bio-)conda recipes whose sources are built with `poetry` and uploaded to pypi are likely to face the same issue. As `snakemake-wrapper-utils` only contains hyphens (`-`) as non-word characters, the suggested `replace("-","_")` should be safe and enough. But a thorough solution should be implemented in `grayskull` (that does conda recipe templating for pypi packages), and in the tooling of `conda-forge` and `bioconda`. One solution to make such recipes more future-proof would be to make tooling respect the [official guidance to query the pypi JSON API to get download urls](https://warehouse.pypa.io/api-reference/integration-guide.html#official-guidance). Examples of how to do this are here: * [stackoverflow answer with example code of querying the pypi JSON API for a download URL](https://stackoverflow.com/a/48327216) * [link to the pypi code for generating the currently used standardized redirect links at `pypi.io`, that also uses the JSON API](pypi/warehouse#13240 (comment)) * closing bracket; use jinja2 `replace()` filter instead of python `str.replace()` * update sha256 according to https://pypi.org/pypi/snakemake-wrapper-utils/0.5.2/json
cokelaer
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Apr 28, 2023
* update snakemake-wrapper-utils to 0.5.2 * make package name in sdist `.tar.gz` filename conform to specs (using underscores) The official specs for sdist file names require that the package name is in snake case, see these places: * https://peps.python.org/pep-0625/#specification * https://packaging.python.org/en/latest/specifications/binary-distribution-format/#escaping-and-unicode * https://peps.python.org/pep-0491/#escaping-and-unicode [`poetry` switched to conforming to these specs with version `1.2.2`](https://github.com/python-poetry/poetry/releases/tag/1.2.2), see: * poetry-core pull request with the actual code changes: python-poetry/poetry-core#484 * poetry pull request pulling them in: python-poetry/poetry#6621 Thus, all (bio-)conda recipes whose sources are built with `poetry` and uploaded to pypi are likely to face the same issue. As `snakemake-wrapper-utils` only contains hyphens (`-`) as non-word characters, the suggested `replace("-","_")` should be safe and enough. But a thorough solution should be implemented in `grayskull` (that does conda recipe templating for pypi packages), and in the tooling of `conda-forge` and `bioconda`. One solution to make such recipes more future-proof would be to make tooling respect the [official guidance to query the pypi JSON API to get download urls](https://warehouse.pypa.io/api-reference/integration-guide.html#official-guidance). Examples of how to do this are here: * [stackoverflow answer with example code of querying the pypi JSON API for a download URL](https://stackoverflow.com/a/48327216) * [link to the pypi code for generating the currently used standardized redirect links at `pypi.io`, that also uses the JSON API](pypi/warehouse#13240 (comment)) * closing bracket; use jinja2 `replace()` filter instead of python `str.replace()` * update sha256 according to https://pypi.org/pypi/snakemake-wrapper-utils/0.5.2/json
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See python-poetry/poetry-core#484