Hi all,
Just update the testing result. It seems that new release TIR can close this issue.
- Please install a new env for the EDTA 20190802 release
- Follow the step by the Shujun provided.
- EDTA_raw
- EDTA_processF
- EDTA -step final
- The time and resource of my plant genome (336M plant genome, 58% repeat estimated by the GenomeScope, 24 cores machine)
| Step |
maxvmem |
time(h) |
raw_fa size |
| Helitron |
7.914GB |
2.352222 |
1.3Mb |
| MITE |
1.529GB |
1.815278 |
4.9kb |
| TIR |
42.127GB |
4.895556 |
20Mb |
| LTR |
19.049GB |
1.417222 |
2.5Mb |
| EDTA_Final |
19.388GB |
19.42389 |
19Mb |
Thanks for the developing.
Bests,
Zhigui
Originally posted by @baozg in #4 (comment)
Hi all,
Just update the testing result. It seems that new release TIR can close this issue.
Thanks for the developing.
Bests,
Zhigui
Originally posted by @baozg in #4 (comment)