Develop algorithms for gene deletion strategies for growth-coupled production#2427
Develop algorithms for gene deletion strategies for growth-coupled production#2427rmtfleming merged 5 commits intoopencobra:developfrom
Conversation
No failed tests ✨ Github Test Reporter by CTRF 💚 |
rmtfleming
left a comment
rmtfleming
left a comment
There was a problem hiding this comment.
remove src/design/TrimGdel/e_coli_core.mat because that is in COBRA.models
Also ALL functions should have complete headers. See printFunctionIO
|
Also, please add test function to |
No failed tests ✨ Github Test Reporter by CTRF 💚 |
|
Dear Ronan Thank you for your review. Also, I made a pull request for ~/COBRA.tutorials and ~/COBRA.models/mat/. Best regards, |
|
I would appreciate it if you could let me know of any additional points that need modification. |
There was a problem hiding this comment.
Hi,
As you have already added this test function in the test folder, I believe you could please remove it from the src code folder.
Thanks
There was a problem hiding this comment.
Thanks. I have removed src/design/TrimGdel/testTrimGdel.m.
Summary:
Failed Tests:No failed tests ✨ Github Test Reporter by CTRF 💚 |
3 participants
Dear Administrator,
TrimGdel appropriately considers GPR rules and derives the minimal and maximal gene deletion strategies for growth-coupled production.
T. Tamura, "Trimming Gene Deletion Strategies for Growth-Coupled Production in Constraint-Based Metabolic Networks: TrimGdel," in IEEE/ACM Transactions on Computational Biology and Bioinformatics, vol. 20, no. 2, pp. 1540-1549, 2023.
Best regards,
Takeyuki Tamura,
Kyoto University, Japan.
developas a target branch (top left drop-down menu)(Note: You may replace [ ] with [X] to check the box)