- Analyze Steady-State Community COBRA Models (steadyCom)
- A step-by-step guide to parsimoneous enzyme usage Flux Balance Analysis (pFBA)
- Atomically resolve a metabolic reconstruction (atomicallyResolveReconstruction)
- Browse Networks in the Matlab Command Window Using surfNet (browseNetwork)
- Creation and simulation of personalized microbiota models through metagenomic data integration (microbiomeModelingToolbox)
- Determining MinSpan vectors of COBRA model (minSpan)
- Flux balance analysis and its variants (FBA)
- Flux Variability Analysis (FVA)
- genetic Minimal Cut Sets (gMCS)
- Proton shuttle testing with sparse flux balance analysis (sparseFBA_protonShuttle)
- Reaction essentiality across multiple models (essentialRxns4MultipleModels)
- Relaxed Flux Balance Analysis: Recon 3 (relaxedFBA)
- Relaxed Flux Balance Analysis: Toy model (relaxedFBABounds)
- Sparse Flux Balance Analysis (sparseFBA)
- Sparse flux balance analysis test for a minimial stoichiometrically balanced cycle involving ATP hydrolysis (sparseFBA_freeATPtest)
- Sparse Linear Optimisation (sparseLP)
- Thermodynamically constrain a metabolic model (vonBertalanffy)
- Uniform sampling (uniformSampling)
- Variational Kinetics (variationalKinetics)
- Varying Parameters analysis
analysis
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