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refactor: extract RunState agent graph identity - #4876
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This pull request improves RunState maintainability by extracting agent graph traversal, identity normalization, signatures, and duplicate-name allocation into a private module. Tool-use tracking and sandbox resume now import these helpers directly from that module.
The extraction preserves existing algorithms, ordering, serialized identities, schemas, errors, and public APIs. It also relocates 18 identity tests into a focused module while preserving all existing test cases and assertions.