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BUG: Error installing NumPy via Pip on macOS Big Sur with python from HomeBrew #17784

@MarioCatuogno

Description

@MarioCatuogno

Reproducing code example:

Install Pandas with PIP after a clean install of macOS Big Sur and Python3.9 via Homebrew.

pip install pandas
pip3 install pandas
pip3 install pandas --no-build-isolation --no-cache-dir
sudo pip3 install pandas --no-cache-dir

These are the only packages actually installed:

Package    Version
---------- -------
pip        20.2.4
setuptools 50.3.2
wheel      0.35.1

Error message:

  Getting requirements to build wheel ... error
  ERROR: Command errored out with exit status 1:
   command: /usr/local/opt/[email protected]/bin/python3.9 /usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/tmpzr3sthd6
       cwd: /private/var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/pip-install-pvlaq6iq/pandas
  Complete output (23 lines):
  init_dgelsd failed init
  Traceback (most recent call last):
    File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 280, in <module>
      main()
    File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 263, in main
      json_out['return_val'] = hook(**hook_input['kwargs'])
    File "/usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py", line 114, in get_requires_for_build_wheel
      return hook(config_settings)
    File "/private/var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/pip-build-env-ly4c8n5_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 149, in get_requires_for_build_wheel
      return self._get_build_requires(
    File "/private/var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/pip-build-env-ly4c8n5_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 130, in _get_build_requires
      self.run_setup()
    File "/private/var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/pip-build-env-ly4c8n5_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 253, in run_setup
      super(_BuildMetaLegacyBackend,
    File "/private/var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/pip-build-env-ly4c8n5_/overlay/lib/python3.9/site-packages/setuptools/build_meta.py", line 145, in run_setup
      exec(compile(code, __file__, 'exec'), locals())
    File "setup.py", line 488, in <module>
      import numpy as np
    File "/private/var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/pip-build-env-ly4c8n5_/overlay/lib/python3.9/site-packages/numpy/__init__.py", line 286, in <module>
      raise RuntimeError(msg)
  RuntimeError: Polyfit sanity test emitted a warning, most likely due to using a buggy Accelerate backend. If you compiled yourself, see site.cfg.example for information. Otherwise report this to the vendor that provided NumPy.
  RankWarning: Polyfit may be poorly conditioned

  ----------------------------------------
ERROR: Command errored out with exit status 1: /usr/local/opt/[email protected]/bin/python3.9 /usr/local/lib/python3.9/site-packages/pip/_vendor/pep517/_in_process.py get_requires_for_build_wheel /var/folders/zv/0q58rjv549bd4qjdqlrwlvl40000gn/T/tmpzr3sthd6 Check the logs for full command output.

NumPy/Python version information:

I have also installed NumPy first (numpy 1.19.4) still getting the same error.
I have opened the following issues and in both of them they said that it's a Numpy error: Pandas#37880 and Pip#9138

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