See: kraken2/issues/222.
Installing Kraken2 via conda will lead to a Segfault when running it.
Waiting for a fix
$ conda list | grep kraken2
kraken2 2.0.8_beta pl526hc9558a2_1 bioconda
$ kraken2 --db kraken \
--threads 2 \
--output metagenome.kraken.out \
--report metagenome.kreport metagenome_Bacillus_subtilis.unaligned.fastq
Loading database information... done.
Processed 72181 sequences (6588042 bp) ...Segmentation fault (core dumped)
See: kraken2/issues/222.
Installing Kraken2 via conda will lead to a Segfault when running it.
Waiting for a fix
$ conda list | grep kraken2 kraken2 2.0.8_beta pl526hc9558a2_1 bioconda $ kraken2 --db kraken \ --threads 2 \ --output metagenome.kraken.out \ --report metagenome.kreport metagenome_Bacillus_subtilis.unaligned.fastq Loading database information... done. Processed 72181 sequences (6588042 bp) ...Segmentation fault (core dumped)