Web app for visualizing pathogen evolution

The Nextstrain website

Viral genome alignment, mutation calling, clade assignment, quality checks and phylogenetic placement

The Nextstrain command-line interface (CLI)—a program called nextstrain—which aims to provide a consistent way to run and visualize pathogen builds and access Nextstrain components like Augur and Auspice across computing environments such as Docker, Conda, and AWS Batch.

Pipeline components for real-time phylodynamic analysis

Datasets for https://github.com/nextstrain/nextclade

Scripts. config, and snakefiles for seasonal-flu nextstrain builds

Nextstrain build for measles virus

Nextstrain build for SARS-CoV-2

Nextstrain build for tuberculosis