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  1. totalspineseg totalspineseg Public

    Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

    Python 47 2

  2. gmseg gmseg Public

    Spinal cord gray matter segmentation using deep dilated convolutions.

    Jupyter Notebook 45 8

  3. domainadaptation domainadaptation Public

    Repository for the article "Unsupervised domain adaptation for medical imaging segmentation with self-ensembling".

    Python 43 9

  4. deep-active-learning deep-active-learning Public

    Implementation of active learning features for AxonDeepSeg software (axon-myelin segmentation)

    Jupyter Notebook 38 13

  5. axonseg axonseg Public

    Segment axon and myelin from microscopy data. Written in Matlab.

    MATLAB 19 12

  6. gifmaker gifmaker Public

    Convert images to GIF animation.

    Python 19 3

Repositories

Showing 10 of 59 repositories
  • intranet.neuro.polymtl.ca Public

    NeuroPoly's lab manual

    neuropoly/intranet.neuro.polymtl.ca’s past year of commit activity
    HTML 4 7 44 1 Updated Apr 2, 2025
  • modular_optuna_ml Public

    Modular framework for automating large-scale permutations of Optuna ML studies

    neuropoly/modular_optuna_ml’s past year of commit activity
    Python 2 0 17 (1 issue needs help) 5 Updated Apr 2, 2025
  • totalspineseg Public

    Robust Segmentation and Labeling of Vertebrae, Intervertebral Discs, Spinal Cord, and Spinal Canal in MRI Images Using nnU-Net and Iterative Algorithm.

    neuropoly/totalspineseg’s past year of commit activity
    Python 47 LGPL-3.0 2 15 2 Updated Mar 27, 2025
  • Susceptibility-Separation-Phantom Public

    This project aims to create and simulate a realistic phantom for susceptibility separation algorithm validation.

    neuropoly/Susceptibility-Separation-Phantom’s past year of commit activity
    MATLAB 8 MIT 1 2 0 Updated Mar 24, 2025
  • neuro.polymtl.ca Public

    NeuroPoly's Website

    neuropoly/neuro.polymtl.ca’s past year of commit activity
    Python 3 7 26 3 Updated Mar 21, 2025
  • bibeasy Public

    Set of tools to manage academic bibliography

    neuropoly/bibeasy’s past year of commit activity
    Python 2 Apache-2.0 0 17 1 Updated Jan 21, 2025
  • neuropoly/slicer-manual-annotation’s past year of commit activity
    Python 4 MIT 1 45 (6 issues need help) 3 Updated Jan 15, 2025
  • distriploy Public

    Release & deployment helper

    neuropoly/distriploy’s past year of commit activity
    Python 1 MIT 0 5 1 Updated Jan 9, 2025
  • coil-qa Public

    Python library to compute coil quality analysis metrics such as SNR, noise correlation matrix and g-factor maps.

    neuropoly/coil-qa’s past year of commit activity
    Python 1 MIT 0 4 0 Updated Nov 28, 2024
  • cortical-surface64mT Public

    Pipeline for generating the cortical surface from Hyperfine pediatric brain MRI

    neuropoly/cortical-surface64mT’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 20, 2024