Skip to content
@microbiomedata

National Microbiome Data Collaborative

National Microbiome Data Collaborative

Pinned Loading

  1. nmdc-schema nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    Python 46 10

  2. docs docs Public

    User-facing, web-based documentation about the NMDC

    Dockerfile 3 5

Repositories

Showing 10 of 82 repositories
  • nmdc-runtime Public

    Runtime system for NMDC data management and orchestration

    microbiomedata/nmdc-runtime’s past year of commit activity
    Python 7 7 133 (3 issues need help) 10 Updated Mar 31, 2026
  • nmdc-schema Public

    National Microbiome Data Collaborative (NMDC) unified data model

    microbiomedata/nmdc-schema’s past year of commit activity
    Python 46 CC0-1.0 10 366 (4 issues need help) 7 Updated Mar 30, 2026
  • nmdc-server Public

    Data portal client and server for NMDC.

    microbiomedata/nmdc-server’s past year of commit activity
    Python 12 1 116 27 Updated Mar 30, 2026
  • nmdc-ontology Public archive

    The NMDC Ontology (NMDCO) is used by the National Microbiome Data Collaborative (NMDC) to annotate multi-omic microbiome metadata

    microbiomedata/nmdc-ontology’s past year of commit activity
    Python 1 CC0-1.0 1 1 1 Updated Mar 30, 2026
  • geoloc-tools Public

    Library to request information about a location regarding the elevation, soil type, and landuse

    microbiomedata/geoloc-tools’s past year of commit activity
    Python 2 1 0 2 Updated Mar 30, 2026
  • nmdc_api_utilities Public

    A library designed to simplify various research tasks for users looking to leverage the NMDC (National Microbiome Data Collaborative) APIs. The library provides a collection of general-purpose functions that facilitate easy access, manipulation, and analysis of microbiome data.

    microbiomedata/nmdc_api_utilities’s past year of commit activity
    Python 6 1 21 4 Updated Mar 27, 2026
  • metaMAGs Public

    Workflow for metagenome assembled genomes generation.

    microbiomedata/metaMAGs’s past year of commit activity
    Python 8 6 3 1 Updated Mar 26, 2026
  • sample-annotator Public

    NMDC Sample Annotator

    microbiomedata/sample-annotator’s past year of commit activity
    Python 7 10 15 6 Updated Mar 26, 2026
  • external-metadata-awareness Public

    Tools for fetching and processing external schemas, ontologies and metadata records. Includes value set maintenance and some GitHub org exploration.

    microbiomedata/external-metadata-awareness’s past year of commit activity
    Jupyter Notebook 2 1 62 0 Updated Mar 26, 2026
  • nmdc_mass_spectrometry_metadata_generation Public

    Mass spectrometry metadata generation

    microbiomedata/nmdc_mass_spectrometry_metadata_generation’s past year of commit activity
    Python 2 1 5 1 Updated Mar 25, 2026
View all repositories