Check out this pull request on 

See visual diffs & provide feedback on Jupyter Notebooks.

Powered by ReviewNB

Tristan has included a notebook in his PR to test the PLINK converter functions. The main issue is that it creates a .bed file which raises issues with correct paths (there also seems to be a problem with authentication when he ran it locally but that’s neither here nor there). I think the best solution is to stop tracking the notebook. @alimanfoo, @ahernank, @cclarkson, @leehart, any opinion?

Hi guys, I fixed the test notebook and the local tests are now completing successfully
Cheers!

Thanks @tristanpwdennis, unit tests are now passing :)

Looks like the plink_convert notebook also needs to be updated though to use "output_dir" instead of "results_dir".

Whoops, sorry, please blame the psychotropic jetlag. Fixed this now, and updated the output path to be the working dir of the notebook (as opposed to a relative path on my local!). Hope this is OK?