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Anopheles refactor PCA functions#481

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alimanfoo merged 9 commits intomalariagen:masterfrom
alimanfoo:anoph-pca-2023-12-12
Dec 13, 2023
Merged

Anopheles refactor PCA functions#481
alimanfoo merged 9 commits intomalariagen:masterfrom
alimanfoo:anoph-pca-2023-12-12

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@alimanfoo alimanfoo commented Dec 12, 2023

  • Continue working towards Anopheles refactor #366 here tackling the PCA computation and plotting functions.
  • Refactor other plotting functions to use common symbol and color setup code where possible.
  • Add notebook to check plotting of diversity stats.

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codecov bot commented Dec 12, 2023

Codecov Report

Attention: Patch coverage is 99.36709% with 1 line in your changes missing coverage. Please review.

Project coverage is 98.17%. Comparing base (aa35798) to head (ed7b7fc).
Report is 432 commits behind head on master.

Files with missing lines Patch % Lines
malariagen_data/anoph/sample_metadata.py 98.24% 1 Missing ⚠️
Additional details and impacted files
@@            Coverage Diff             @@
##           master     #481      +/-   ##
==========================================
+ Coverage   98.09%   98.17%   +0.08%     
==========================================
  Files          28       29       +1     
  Lines        2200     2358     +158     
==========================================
+ Hits         2158     2315     +157     
- Misses         42       43       +1     

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@alimanfoo alimanfoo mentioned this pull request Dec 12, 2023
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@alimanfoo alimanfoo merged commit 1208b29 into malariagen:master Dec 13, 2023
@alimanfoo alimanfoo deleted the anoph-pca-2023-12-12 branch December 13, 2023 00:18
@alimanfoo alimanfoo added the BMGF-001927 Work supported by BMGF grant INV-001927 (MalariaGEN 2019-2024). label Dec 4, 2024
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BMGF-001927 Work supported by BMGF grant INV-001927 (MalariaGEN 2019-2024).

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