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Karyotype frequencies #652

@alimanfoo

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@alimanfoo

For Ag3 we now have a karyotype() function which infers a karyotype for each sample at each of several possible inversions on Chromosome 2. Suggest to also add a karyotype_frequencies() and karyotype_frequencies_advanced() function which compute frequencies within cohorts, analogous to existing functions for SNPs and CNVs.

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