name: tests

on:

push:

branches:

- master

pull_request:

branches:

- master

jobs:

tests:

strategy:

fail-fast: true

matrix:

python-version: ["3.10", "3.11", "3.12"]

numpy-spec:

# Keep this aligned with pyproject.toml: numpy = ">=2.0.2,<2.1"

- "==2.0.2" # locked baseline

- ">=2.0.2,<2.1" # latest allowed in declared range

runs-on: ubuntu-latest

steps:

- name: Checkout source

uses: actions/checkout@v4

- name: Setup python

uses: ./.github/actions/setup-python

with:

python-version: ${{ matrix.python-version }}

- name: Install matrix NumPy version

run: poetry run pip install --upgrade --no-deps "numpy${{ matrix.numpy-spec }}"

- name: Verify NumPy version and spec

env:

NUMPY_SPEC: ${{ matrix.numpy-spec }}

run: |

poetry run python - <<'PY'

import os

import numpy

from packaging.specifiers import SpecifierSet

spec = SpecifierSet(os.environ["NUMPY_SPEC"])

version = numpy.__version__

if version not in spec:

raise RuntimeError(

f"NumPy version {version} does not satisfy matrix spec {spec}"

)

print("NumPy version:", version, "| spec:", spec)

PY

- name: Run unit tests

run: poetry run pytest -v tests --ignore tests/integration --typeguard-packages=malariagen_data,malariagen_data.anoph