Spatial Patterning of Lake Nutrients and Morphometry at Macroscales: Importance of Regional Factors and Aquatic-Terrestrial Linkages

J. Stachelek, Michigan State University, 2020

Products

pdf: stachelek-dissertation.pdf

Prerequsites

R packages

• bookdown

• tinytex

LaTeX packages

See Dockerfile. Install with tinytex::tlmgr_install("package").

Building

pdf + html

From the command line type: $ make all

Editing

• The title page, abstract, preface, and introduction source is set in correct-front-matter.tex. Relevant sections need to be copied to index.Rmd if attemping to build an html version.

• Each individual chapter is a numbered Rmd file in the top level folder.

• End matter is set in end.Rmd

• Bibtex files are listed in index.Rmd, stored in the top level folder, and symlinked (or copied) to the _bookdown_files directory

• Figures are stored under figures and copied to _bookdown_files/figures

• Formatting of figure and table captions for supplementary material is set in preamble.tex

• Make LaTeX commands available to the initial Rmd conversion process by placing them in preamble.tex

Reproducibility

docker build -t jsta/dissertation:latest .
docker create --name dissertation3 jsta/dissertation
docker cp dissertation3:~/stachelek-dissertation.pdf test.pdf

Links

https://grad.msu.edu/etd/formatting-guide

https://github.com/jrosen48/dissertation

https://ctan.org/pkg/msu-thesis?lang=en

https://twitter.com/JillDeines/status/991725606311116800