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1. HiC-Analysis-of-Egr2-AS-RNA HiC-Analysis-of-Egr2-AS-RNA Public

   Hi-C analysis scripts for manuscript

   R 3

2. CNV_Me CNV_Me Public

   Copy number variation (CNV) caller utilizing BAM files

   Python 2 1

3. ben-laufer/CpG_Me ben-laufer/CpG_Me Public

   A whole genome bisulfite sequencing (WGBS) pipeline for the alignment and QC of DNA methylation that goes from from raw reads (FastQ) to a CpG count matrix (Bismark cytosine reports)

   Shell 24 12

4. ben-laufer/DMRichR ben-laufer/DMRichR Public

   A R package and executable for the preprocessing, statistical analysis, and downstream testing and visualization of differentially methylated regions (DMRs) from CpG count matrices (Bismark cytosin…

   R 50 30

5. SexChecker SexChecker Public

   Check sex of samples using k-means clustering

   Python 1

6. machine-learning-asd-predictors machine-learning-asd-predictors Public

   Machine learning of DNA methylation predictors for Autism Spectrum Disorders (ASD)

   R 2 2