I expect to be able to download this file.
---------------------------------------------------------------------------
timeout Traceback (most recent call last)
/usr/lib/python3/dist-packages/urllib3/connection.py in _new_conn(self)
158 try:
--> 159 conn = connection.create_connection(
160 (self._dns_host, self.port), self.timeout, **extra_kw
/usr/lib/python3/dist-packages/urllib3/util/connection.py in create_connection(address, timeout, source_address, socket_options)
83 if err is not None:
---> 84 raise err
85
/usr/lib/python3/dist-packages/urllib3/util/connection.py in create_connection(address, timeout, source_address, socket_options)
73 sock.bind(source_address)
---> 74 sock.connect(sa)
75 return sock
timeout: timed out
During handling of the above exception, another exception occurred:
ConnectTimeoutError Traceback (most recent call last)
/usr/lib/python3/dist-packages/urllib3/connectionpool.py in urlopen(self, method, url, body, headers, retries, redirect, assert_same_host, timeout, pool_timeout, release_conn, chunked, body_pos, **response_kw)
664 # Make the request on the httplib connection object.
--> 665 httplib_response = self._make_request(
666 conn,
/usr/lib/python3/dist-packages/urllib3/connectionpool.py in _make_request(self, conn, method, url, timeout, chunked, **httplib_request_kw)
375 try:
--> 376 self._validate_conn(conn)
377 except (SocketTimeout, BaseSSLError) as e:
/usr/lib/python3/dist-packages/urllib3/connectionpool.py in _validate_conn(self, conn)
995 if not getattr(conn, "sock", None): # AppEngine might not have `.sock`
--> 996 conn.connect()
997
/usr/lib/python3/dist-packages/urllib3/connection.py in connect(self)
313 # Add certificate verification
--> 314 conn = self._new_conn()
315 hostname = self.host
/usr/lib/python3/dist-packages/urllib3/connection.py in _new_conn(self)
163 except SocketTimeout:
--> 164 raise ConnectTimeoutError(
165 self,
ConnectTimeoutError: (<urllib3.connection.VerifiedHTTPSConnection object at 0x7f06dd698850>, 'Connection to the-eye.eu timed out. (connect timeout=10.0)')
During handling of the above exception, another exception occurred:
MaxRetryError Traceback (most recent call last)
/usr/lib/python3/dist-packages/requests/adapters.py in send(self, request, stream, timeout, verify, cert, proxies)
438 if not chunked:
--> 439 resp = conn.urlopen(
440 method=request.method,
/usr/lib/python3/dist-packages/urllib3/connectionpool.py in urlopen(self, method, url, body, headers, retries, redirect, assert_same_host, timeout, pool_timeout, release_conn, chunked, body_pos, **response_kw)
718
--> 719 retries = retries.increment(
720 method, url, error=e, _pool=self, _stacktrace=sys.exc_info()[2]
/usr/lib/python3/dist-packages/urllib3/util/retry.py in increment(self, method, url, response, error, _pool, _stacktrace)
435 if new_retry.is_exhausted():
--> 436 raise MaxRetryError(_pool, url, error or ResponseError(cause))
437
MaxRetryError: HTTPSConnectionPool(host='the-eye.eu', port=443): Max retries exceeded with url: /public/AI/pile_preliminary_components/PUBMED_title_abstracts_2019_baseline.jsonl.zst (Caused by ConnectTimeoutError(<urllib3.connection.VerifiedHTTPSConnection object at 0x7f06dd698850>, 'Connection to the-eye.eu timed out. (connect timeout=10.0)'))
During handling of the above exception, another exception occurred:
ConnectTimeout Traceback (most recent call last)
/tmp/ipykernel_15104/606583593.py in <module>
3 # This takes a few minutes to run, so go grab a tea or coffee while you wait :)
4 data_files = "https://the-eye.eu/public/AI/pile_preliminary_components/PUBMED_title_abstracts_2019_baseline.jsonl.zst"
----> 5 pubmed_dataset = load_dataset("json", data_files=data_files, split="train")
6 pubmed_dataset
~/.local/lib/python3.8/site-packages/datasets/load.py in load_dataset(path, name, data_dir, data_files, split, cache_dir, features, download_config, download_mode, ignore_verifications, keep_in_memory, save_infos, revision, use_auth_token, task, streaming, script_version, **config_kwargs)
1655
1656 # Create a dataset builder
-> 1657 builder_instance = load_dataset_builder(
1658 path=path,
1659 name=name,
~/.local/lib/python3.8/site-packages/datasets/load.py in load_dataset_builder(path, name, data_dir, data_files, cache_dir, features, download_config, download_mode, revision, use_auth_token, script_version, **config_kwargs)
1492 download_config = download_config.copy() if download_config else DownloadConfig()
1493 download_config.use_auth_token = use_auth_token
-> 1494 dataset_module = dataset_module_factory(
1495 path, revision=revision, download_config=download_config, download_mode=download_mode, data_files=data_files
1496 )
~/.local/lib/python3.8/site-packages/datasets/load.py in dataset_module_factory(path, revision, download_config, download_mode, force_local_path, dynamic_modules_path, data_files, **download_kwargs)
1116 # Try packaged
1117 if path in _PACKAGED_DATASETS_MODULES:
-> 1118 return PackagedDatasetModuleFactory(
1119 path, data_files=data_files, download_config=download_config, download_mode=download_mode
1120 ).get_module()
~/.local/lib/python3.8/site-packages/datasets/load.py in get_module(self)
773 else get_patterns_locally(str(Path().resolve()))
774 )
--> 775 data_files = DataFilesDict.from_local_or_remote(patterns, use_auth_token=self.downnload_config.use_auth_token)
776 module_path, hash = _PACKAGED_DATASETS_MODULES[self.name]
777 builder_kwargs = {"hash": hash, "data_files": data_files}
~/.local/lib/python3.8/site-packages/datasets/data_files.py in from_local_or_remote(cls, patterns, base_path, allowed_extensions, use_auth_token)
576 for key, patterns_for_key in patterns.items():
577 out[key] = (
--> 578 DataFilesList.from_local_or_remote(
579 patterns_for_key,
580 base_path=base_path,
~/.local/lib/python3.8/site-packages/datasets/data_files.py in from_local_or_remote(cls, patterns, base_path, allowed_extensions, use_auth_token)
545 base_path = base_path if base_path is not None else str(Path().resolve())
546 data_files = resolve_patterns_locally_or_by_urls(base_path, patterns, allowed_extensions)
--> 547 origin_metadata = _get_origin_metadata_locally_or_by_urls(data_files, use_auth_token=use_auth_token)
548 return cls(data_files, origin_metadata)
549
~/.local/lib/python3.8/site-packages/datasets/data_files.py in _get_origin_metadata_locally_or_by_urls(data_files, max_workers, use_auth_token)
492 data_files: List[Union[Path, Url]], max_workers=64, use_auth_token: Optional[Union[bool, str]] = None
493 ) -> Tuple[str]:
--> 494 return thread_map(
495 partial(_get_single_origin_metadata_locally_or_by_urls, use_auth_token=use_auth_token),
496 data_files,
~/.local/lib/python3.8/site-packages/tqdm/contrib/concurrent.py in thread_map(fn, *iterables, **tqdm_kwargs)
92 """
93 from concurrent.futures import ThreadPoolExecutor
---> 94 return _executor_map(ThreadPoolExecutor, fn, *iterables, **tqdm_kwargs)
95
96
~/.local/lib/python3.8/site-packages/tqdm/contrib/concurrent.py in _executor_map(PoolExecutor, fn, *iterables, **tqdm_kwargs)
74 map_args.update(chunksize=chunksize)
75 with PoolExecutor(**pool_kwargs) as ex:
---> 76 return list(tqdm_class(ex.map(fn, *iterables, **map_args), **kwargs))
77
78
~/.local/lib/python3.8/site-packages/tqdm/notebook.py in __iter__(self)
252 def __iter__(self):
253 try:
--> 254 for obj in super(tqdm_notebook, self).__iter__():
255 # return super(tqdm...) will not catch exception
256 yield obj
~/.local/lib/python3.8/site-packages/tqdm/std.py in __iter__(self)
1171 # (note: keep this check outside the loop for performance)
1172 if self.disable:
-> 1173 for obj in iterable:
1174 yield obj
1175 return
/usr/lib/python3.8/concurrent/futures/_base.py in result_iterator()
617 # Careful not to keep a reference to the popped future
618 if timeout is None:
--> 619 yield fs.pop().result()
620 else:
621 yield fs.pop().result(end_time - time.monotonic())
/usr/lib/python3.8/concurrent/futures/_base.py in result(self, timeout)
442 raise CancelledError()
443 elif self._state == FINISHED:
--> 444 return self.__get_result()
445 else:
446 raise TimeoutError()
/usr/lib/python3.8/concurrent/futures/_base.py in __get_result(self)
387 if self._exception:
388 try:
--> 389 raise self._exception
390 finally:
391 # Break a reference cycle with the exception in self._exception
/usr/lib/python3.8/concurrent/futures/thread.py in run(self)
55
56 try:
---> 57 result = self.fn(*self.args, **self.kwargs)
58 except BaseException as exc:
59 self.future.set_exception(exc)
~/.local/lib/python3.8/site-packages/datasets/data_files.py in _get_single_origin_metadata_locally_or_by_urls(data_file, use_auth_token)
483 if isinstance(data_file, Url):
484 data_file = str(data_file)
--> 485 return (request_etag(data_file, use_auth_token=use_auth_token),)
486 else:
487 data_file = str(data_file.resolve())
~/.local/lib/python3.8/site-packages/datasets/utils/file_utils.py in request_etag(url, use_auth_token)
489 def request_etag(url: str, use_auth_token: Optional[Union[str, bool]] = None) -> Optional[str]:
490 headers = get_authentication_headers_for_url(url, use_auth_token=use_auth_token)
--> 491 response = http_head(url, headers=headers, max_retries=3)
492 response.raise_for_status()
493 etag = response.headers.get("ETag") if response.ok else None
~/.local/lib/python3.8/site-packages/datasets/utils/file_utils.py in http_head(url, proxies, headers, cookies, allow_redirects, timeout, max_retries)
474 headers = copy.deepcopy(headers) or {}
475 headers["user-agent"] = get_datasets_user_agent(user_agent=headers.get("user-agent"))
--> 476 response = _request_with_retry(
477 method="HEAD",
478 url=url,
~/.local/lib/python3.8/site-packages/datasets/utils/file_utils.py in _request_with_retry(method, url, max_retries, base_wait_time, max_wait_time, timeout, **params)
407 except (requests.exceptions.ConnectTimeout, requests.exceptions.ConnectionError) as err:
408 if tries > max_retries:
--> 409 raise err
410 else:
411 logger.info(f"{method} request to {url} timed out, retrying... [{tries/max_retries}]")
~/.local/lib/python3.8/site-packages/datasets/utils/file_utils.py in _request_with_retry(method, url, max_retries, base_wait_time, max_wait_time, timeout, **params)
403 tries += 1
404 try:
--> 405 response = requests.request(method=method.upper(), url=url, timeout=timeout, **params)
406 success = True
407 except (requests.exceptions.ConnectTimeout, requests.exceptions.ConnectionError) as err:
/usr/lib/python3/dist-packages/requests/api.py in request(method, url, **kwargs)
58 # cases, and look like a memory leak in others.
59 with sessions.Session() as session:
---> 60 return session.request(method=method, url=url, **kwargs)
61
62
/usr/lib/python3/dist-packages/requests/sessions.py in request(self, method, url, params, data, headers, cookies, files, auth, timeout, allow_redirects, proxies, hooks, stream, verify, cert, json)
531 }
532 send_kwargs.update(settings)
--> 533 resp = self.send(prep, **send_kwargs)
534
535 return resp
/usr/lib/python3/dist-packages/requests/sessions.py in send(self, request, **kwargs)
644
645 # Send the request
--> 646 r = adapter.send(request, **kwargs)
647
648 # Total elapsed time of the request (approximately)
/usr/lib/python3/dist-packages/requests/adapters.py in send(self, request, stream, timeout, verify, cert, proxies)
502 # TODO: Remove this in 3.0.0: see #2811
503 if not isinstance(e.reason, NewConnectionError):
--> 504 raise ConnectTimeout(e, request=request)
505
506 if isinstance(e.reason, ResponseError):
ConnectTimeout: HTTPSConnectionPool(host='the-eye.eu', port=443): Max retries exceeded with url: /public/AI/pile_preliminary_components/PUBMED_title_abstracts_2019_baseline.jsonl.zst (Caused by ConnectTimeoutError(<urllib3.connection.VerifiedHTTPSConnection object at 0x7f06dd698850>, 'Connection to the-eye.eu timed out. (connect timeout=10.0)'))
Describe the bug
I am unable to download the PubMed dataset from the link provided in the Hugging Face Course (Chapter 5 Section 4).
https://the-eye.eu/public/AI/pile_preliminary_components/PUBMED_title_abstracts_2019_baseline.jsonl.zst
Steps to reproduce the bug
I also tried with
wgetas follows.Expected results
I expect to be able to download this file.
Actual results
Traceback
Environment info
datasetsversion: 1.17.0