vgan is a suite of tools for pangenomics. We currently support three main subcommands: euka (for bilaterian taxa detection and abundance estimation of ancient environmental DNA), Haplocart (for modern human mtDNA haplogroup classification), and soibean (for the detection of one or more contributing species to a filtered ancient environmental sample). The underlying data structure is the VG graph (see https://github.com/vgteam/vg).

Table of Content

1. Installation
2. euka
3. HaploCart
4. soibean
5. aeDNA example workflow
6. Unit tests