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@greenelab

Greene Laboratory

Greene Laboratory at the University of Colorado Anschutz

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  1. scihub scihub Public

    Source code and data analyses for the Sci-Hub Coverage Study

    Jupyter Notebook 306 39

  2. BioBombe BioBombe Public

    BioBombe: Sequentially compressed gene expression features enhances biological signatures

    Jupyter Notebook 65 26

  3. lab-website-template lab-website-template Public template

    An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

    HTML 575 445

  4. covid19-review covid19-review Public

    A collaborative review of the emerging COVID-19 literature. Join the chat here:

    TeX 119 80

  5. deep-review deep-review Public

    A collaboratively written review paper on deep learning, genomics, and precision medicine

    HTML 1.3k 270

  6. tybalt tybalt Public

    Training and evaluating a variational autoencoder for pan-cancer gene expression data

    HTML 176 64

Repositories

Showing 10 of 182 repositories
  • multi-dwpc Public

    This repository contains scripts testing aggregate degree weighted path count (DWPC) statistics.

    greenelab/multi-dwpc's past year of commit activity
    Python 1 BSD-3-Clause 2 0 1 Updated Sep 14, 2026
  • scrumlord Public

    Continuous administration of the Greene Lab's electronic scrum

    greenelab/scrumlord's past year of commit activity
    Python 13 BSD-3-Clause 10 2 0 Updated Sep 13, 2026
  • T21-eQTL Public

    Cohort-scale extension of Hunter et al. (2023) "Transcription dosage compensation does not occur in Down syndrome" (BMC Biology 21:228), applied to the Human Trisome Project (HTP): 304 T21 + 95 Control whole-blood RNA-seq samples, 302 of the T21 subjects with paired chr21 genotypes.

    greenelab/T21-eQTL's past year of commit activity
    R 0 BSD-3-Clause 1 0 0 Updated Sep 9, 2026
  • repository_analysis Public

    Analysis of GitHub repository and project content.

    greenelab/repository_analysis's past year of commit activity
    Python 0 BSD-3-Clause 1 0 0 Updated Aug 11, 2026
  • greenelab.com Public

    The website source code for greenelab.com

    greenelab/greenelab.com's past year of commit activity
    HTML 3 BSD-3-Clause 26 1 0 Updated Aug 9, 2026
  • lab-website-template Public template

    An easy-to-use, flexible website template for labs. https://doi.org/10.5281/zenodo.17228741

    greenelab/lab-website-template's past year of commit activity
    HTML 575 BSD-3-Clause 445 7 0 Updated Aug 3, 2026
  • hgsoc-reconstruction Public
    greenelab/hgsoc-reconstruction's past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause-Patent 0 0 1 Updated Jul 15, 2026
  • hgsoc_data_detective Public
    greenelab/hgsoc_data_detective's past year of commit activity
    Jupyter Notebook 0 BSD-2-Clause-Patent 0 0 0 Updated Jul 12, 2026
  • hgsoc-concordance-rotation Public
    greenelab/hgsoc-concordance-rotation's past year of commit activity
    Python 0 MIT 0 0 1 Updated Jul 10, 2026
  • fm-pm-eval-manuscript Public

    Collaborative manuscript for companion repo: github.com/greenelab/fm-pm-evaluator.

    greenelab/fm-pm-eval-manuscript's past year of commit activity
    HTML 0 CC-BY-4.0 1 3 0 Updated Jun 25, 2026
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