fix: avoid 403 from to_gbq when table has policyTags by tswast · Pull Request #356 · googleapis/python-bigquery-pandas

tswast · 2021-03-29T20:46:04Z

Follow-up to googleapis/python-bigquery#557

closes #xxxx
tests added / passed
passes nox -s blacken lint
docs/source/changelog.rst entry

tswast · 2021-03-29T20:51:27Z

@@ -0,0 +1,95 @@
+"""Module for checking dependency versions and supported features."""


I pulled this out of gbq.py, because load.py also needs some of this logic now.

tswast · 2021-03-29T21:26:42Z

-            yield remaining_rows
-            client.load_table_from_file(
-                chunk_buffer,
+        if FEATURES.bigquery_has_from_dataframe_with_csv:


Not strictly necessary (just the "omit policyTags" logic was), but I thought this might be a good opportunity to use more logic from google-cloud-bigquery, per #339

The CSV encoding in google-cloud-bigquery is still relatively new, so I didn't want to bump our minimum google-cloud-bigquery versions yet. Discussion: https://github.com/pydata/pandas-gbq/issues/357

tswast · 2021-03-29T21:34:35Z

conda-3.7 test failures:

=================================== FAILURES ===================================
_____________________ TestReadGBQIntegration.test_ddl[env] _____________________

self = <tests.system.test_gbq.TestReadGBQIntegration object at 0x7f9dc005a850>
random_dataset = Dataset(DatasetReference('****************', 'pandas_gbq_c4735f6e_fbe3_4373_9148_93ad820ed06e'))
project_id = '****************'

    def test_ddl(self, random_dataset, project_id):
        # Bug fix for https://github.com/pydata/pandas-gbq/issues/45
        df = gbq.read_gbq(
            "CREATE OR REPLACE TABLE {}.test_ddl (x INT64)".format(
>               random_dataset.dataset_id
            )
        )

tests/system/test_gbq.py:635: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
pandas_gbq/gbq.py:857: in read_gbq
    dtypes=dtypes,
pandas_gbq/gbq.py:481: in run_query
    user_dtypes=dtypes,
pandas_gbq/gbq.py:536: in _download_results
    **to_dataframe_kwargs
/opt/conda/envs/test-environment/lib/python3.7/site-packages/google/cloud/bigquery/table.py:1478: in to_dataframe
    return self._to_dataframe_tabledata_list(dtypes, progress_bar=progress_bar)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/google/cloud/bigquery/table.py:1317: in _to_dataframe_tabledata_list
    current_frame = self._to_dataframe_dtypes(page, column_names, dtypes)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/google/cloud/bigquery/table.py:1309: in _to_dataframe_dtypes
    return pandas.DataFrame(columns, columns=column_names)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/frame.py:348: in __init__
    mgr = self._init_dict(data, index, columns, dtype=dtype)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/frame.py:451: in _init_dict
    nan_dtype)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

value = nan, length = 0, dtype = <class 'object'>

    def construct_1d_arraylike_from_scalar(value, length, dtype):
        """
        create a np.ndarray / pandas type of specified shape and dtype
        filled with values
    
        Parameters
        ----------
        value : scalar value
        length : int
        dtype : pandas_dtype / np.dtype
    
        Returns
        -------
        np.ndarray / pandas type of length, filled with value
    
        """
        if is_datetimetz(dtype):
            from pandas import DatetimeIndex
            subarr = DatetimeIndex([value] * length, dtype=dtype)
        elif is_categorical_dtype(dtype):
            from pandas import Categorical
            subarr = Categorical([value] * length, dtype=dtype)
        else:
            if not isinstance(dtype, (np.dtype, type(np.dtype))):
>               dtype = dtype.dtype
E               AttributeError: type object 'object' has no attribute 'dtype'

/opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/dtypes/cast.py:1196: AttributeError
__________________ TestReadGBQIntegration.test_zero_rows[env] __________________

self = <tests.system.test_gbq.TestReadGBQIntegration object at 0x7f9dc01ea890>
project_id = '****************'

    def test_zero_rows(self, project_id):
        # Bug fix for https://github.com/pandas-dev/pandas/issues/10273
        df = gbq.read_gbq(
            'SELECT name, number, (mlc_class = "HU") is_hurricane, iso_time '
            "FROM `bigquery-public-data.noaa_hurricanes.hurricanes` "
            'WHERE iso_time = TIMESTAMP("1900-01-01 00:00:00") ',
            project_id=project_id,
>           credentials=self.credentials,
        )

tests/system/test_gbq.py:662: 
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 
pandas_gbq/gbq.py:857: in read_gbq
    dtypes=dtypes,
pandas_gbq/gbq.py:481: in run_query
    user_dtypes=dtypes,
pandas_gbq/gbq.py:536: in _download_results
    **to_dataframe_kwargs
/opt/conda/envs/test-environment/lib/python3.7/site-packages/google/cloud/bigquery/table.py:1478: in to_dataframe
    return self._to_dataframe_tabledata_list(dtypes, progress_bar=progress_bar)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/google/cloud/bigquery/table.py:1317: in _to_dataframe_tabledata_list
    current_frame = self._to_dataframe_dtypes(page, column_names, dtypes)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/google/cloud/bigquery/table.py:1309: in _to_dataframe_dtypes
    return pandas.DataFrame(columns, columns=column_names)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/frame.py:348: in __init__
    mgr = self._init_dict(data, index, columns, dtype=dtype)
/opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/frame.py:451: in _init_dict
    nan_dtype)
_ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ _ 

value = nan, length = 0, dtype = <class 'object'>

    def construct_1d_arraylike_from_scalar(value, length, dtype):
        """
        create a np.ndarray / pandas type of specified shape and dtype
        filled with values
    
        Parameters
        ----------
        value : scalar value
        length : int
        dtype : pandas_dtype / np.dtype
    
        Returns
        -------
        np.ndarray / pandas type of length, filled with value
    
        """
        if is_datetimetz(dtype):
            from pandas import DatetimeIndex
            subarr = DatetimeIndex([value] * length, dtype=dtype)
        elif is_categorical_dtype(dtype):
            from pandas import Categorical
            subarr = Categorical([value] * length, dtype=dtype)
        else:
            if not isinstance(dtype, (np.dtype, type(np.dtype))):
>               dtype = dtype.dtype
E               AttributeError: type object 'object' has no attribute 'dtype'

/opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/dtypes/cast.py:1196: AttributeError
_______________ test_to_gbq_wo_verbose_w_new_pandas_no_warnings ________________

monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f9dbf7947d0>
recwarn = WarningsRecorder(record=True)

    def test_to_gbq_wo_verbose_w_new_pandas_no_warnings(monkeypatch, recwarn):
        monkeypatch.setattr(
            type(FEATURES),
            "pandas_has_deprecated_verbose",
            mock.PropertyMock(return_value=True),
        )
        try:
            gbq.to_gbq(
                DataFrame([[1]]), "dataset.tablename", project_id="my-project"
            )
        except gbq.TableCreationError:
            pass
>       assert len(recwarn) == 0
E       assert 1 == 0
E         +1
E         -0

tests/unit/test_gbq.py:172: AssertionError
_______________ test_to_gbq_with_verbose_old_pandas_no_warnings ________________

monkeypatch = <_pytest.monkeypatch.MonkeyPatch object at 0x7f9dbf53b490>
recwarn = WarningsRecorder(record=True)

    def test_to_gbq_with_verbose_old_pandas_no_warnings(monkeypatch, recwarn):
        monkeypatch.setattr(
            type(FEATURES),
            "pandas_has_deprecated_verbose",
            mock.PropertyMock(return_value=False),
        )
        try:
            gbq.to_gbq(
                DataFrame([[1]]),
                "dataset.tablename",
                project_id="my-project",
                verbose=True,
            )
        except gbq.TableCreationError:
            pass
>       assert len(recwarn) == 0
E       assert 1 == 0
E         +1
E         -0

tests/unit/test_gbq.py:190: AssertionError
=============================== warnings summary ===============================
../../opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/dtypes/inference.py:6
  /opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/dtypes/inference.py:6: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
    from collections import Iterable

../../opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/tools/datetimes.py:3
  /opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/tools/datetimes.py:3: DeprecationWarning: Using or importing the ABCs from 'collections' instead of from 'collections.abc' is deprecated since Python 3.3,and in 3.9 it will stop working
    from collections import MutableMapping

../../opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/util/testing.py:47
  /opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/util/testing.py:47: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    from pandas._libs import testing as _testing

tests/system/test_auth.py:66
  /root/project/tests/system/test_auth.py:66: PytestUnknownMarkWarning: Unknown pytest.mark.local_auth - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
    @pytest.mark.local_auth

tests/system/test_auth.py:82
  /root/project/tests/system/test_auth.py:82: PytestUnknownMarkWarning: Unknown pytest.mark.local_auth - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
    @pytest.mark.local_auth

tests/system/test_auth.py:94
  /root/project/tests/system/test_auth.py:94: PytestUnknownMarkWarning: Unknown pytest.mark.local_auth - is this a typo?  You can register custom marks to avoid this warning - for details, see https://docs.pytest.org/en/stable/mark.html
    @pytest.mark.local_auth

../../opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/indexes/base.py:378: 6 warnings
tests/system/test_gbq.py: 297 warnings
tests/unit/test_gbq.py: 7 warnings
tests/unit/test_load.py: 8 warnings
tests/unit/test_timestamp.py: 5 warnings
  /opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/indexes/base.py:378: DeprecationWarning: `np.bool` is a deprecated alias for the builtin `bool`. To silence this warning, use `bool` by itself. Doing this will not modify any behavior and is safe. If you specifically wanted the numpy scalar type, use `np.bool_` here.
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    elif issubclass(data.dtype.type, np.bool) or is_bool_dtype(data):

tests/system/test_gbq.py: 54 warnings
  /root/project/pandas_gbq/gbq.py:536: UserWarning: A progress bar was requested, but there was an error loading the tqdm library. Please install tqdm to use the progress bar functionality.
    **to_dataframe_kwargs

tests/system/test_gbq.py: 12 warnings
tests/unit/test_gbq.py: 5 warnings
  /opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/frame.py:7616: DeprecationWarning: `np.object` is a deprecated alias for the builtin `object`. To silence this warning, use `object` by itself. Doing this will not modify any behavior and is safe. 
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    if dtype != object and dtype != np.object:

-- Docs: https://docs.pytest.org/en/stable/warnings.html

---------- coverage: platform linux, python 3.7.10-final-0 -----------
Coverage XML written to file /tmp/pytest-cov.xml

=========================== short test summary info ============================
FAILED tests/system/test_gbq.py::TestReadGBQIntegration::test_ddl[env] - Attr...
FAILED tests/system/test_gbq.py::TestReadGBQIntegration::test_zero_rows[env]
FAILED tests/unit/test_gbq.py::test_to_gbq_wo_verbose_w_new_pandas_no_warnings
FAILED tests/unit/test_gbq.py::test_to_gbq_with_verbose_old_pandas_no_warnings
= 4 failed, 162 passed, 8 skipped, 3 deselected, 400 warnings in 233.09s (0:03:53) =

The dtype errors are possibly fixed if we bump the minimum version of pandas? Not sure what the extra warning we're getting in to_gbq is. Maybe?

tests/unit/test_gbq.py: 5 warnings
  /opt/conda/envs/test-environment/lib/python3.7/site-packages/pandas/core/frame.py:7616: DeprecationWarning: `np.object` is a deprecated alias for the builtin `object`. To silence this warning, use `object` by itself. Doing this will not modify any behavior and is safe. 
  Deprecated in NumPy 1.20; for more details and guidance: https://numpy.org/devdocs/release/1.20.0-notes.html#deprecations
    if dtype != object and dtype != np.object:

fix: avoid 403 from to_gbq when table has policyTags

e8e57cb

tswast commented Mar 29, 2021

View reviewed changes

tswast added 2 commits March 30, 2021 10:02

pin dependency versions in conda test session

f38cb93

remove pyarrow and bqstorage API from conda session with min pandas

34f5104

tswast merged commit 853f792 into googleapis:master Mar 30, 2021

tswast deleted the b182204971-policy-tags branch March 30, 2021 15:21

tswast mentioned this pull request Sep 21, 2021

regression: failing test test_load_chunks_omits_policy_tags #387

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fix: avoid 403 from to_gbq when table has policyTags#356

fix: avoid 403 from to_gbq when table has policyTags#356
tswast merged 3 commits intogoogleapis:masterfrom
tswast:b182204971-policy-tags

tswast commented Mar 29, 2021 •

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		@@ -0,0 +1,95 @@
		"""Module for checking dependency versions and supported features."""

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