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Add example: check citation faithfulness in RAG - #1296

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kkorpal merged 4 commits into
google-gemini:mainfrom
tonydzi:feat/citation-faithfulness-check
Aug 17, 2026
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kkorpal merged 4 commits into
google-gemini:mainfrom
tonydzi:feat/citation-faithfulness-check

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@tonydzi

@tonydzi tonydzi commented Jul 24, 2026

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When a Gemini RAG answer cites its sources, the citations fail in ways that read as authoritative and slip past an LLM judge: fabricated (a quote in no document), frankenquote (real words, a sentence never written contiguously), and misattributed (a real quote from the wrong document).

This example shows a cheap deterministic detector → expensive judge pattern:

  1. Ask Gemini, via structured output (a response_schema), to return each claim with the document_id it relies on and a short verbatim quote.
  2. Run a 0-token verbatim gate (pure Python — no model, no key) that checks each quote appears in the cited document. This rejects the three failure modes above and runs offline.
  3. Only for quotes that pass the gate, optionally call a burden-of-proof judge — fabrications never reach it, so they cost zero tokens.

The offline section executes end-to-end (verified with nbclient):

OK   [        found]  Gemini 2.5 Pro supports a 1M token context.
FLAG [misattributed]  Flash is built for low latency.
FLAG [    not_found]  Flash has a 1 million token context.
FLAG [    not_found]  Gemini 2.5 Pro runs fully offline.

Added to examples/README.md. The live section uses the google-genai SDK with a response_schema. The gate is inlined so the notebook has no extra dependency; its standalone, framework-agnostic version (gate + burden-of-proof judge) lives at https://github.com/Palo-Alto-AI-Research-Lab/verbatim-citation-gate .

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Summary of Changes

Hello, I'm Gemini Code Assist1! I'm currently reviewing this pull request and will post my feedback shortly. In the meantime, here's a summary to help you and other reviewers quickly get up to speed!

This pull request introduces a new example notebook focused on improving the reliability of RAG systems by verifying citation faithfulness. It provides a lightweight, deterministic approach to filter out common citation errors like fabrications and misattributions, reducing unnecessary LLM costs by only invoking a judge for potentially valid citations.

Highlights

  • New RAG Citation Example: Added a new notebook, Citation_Faithfulness_Check.ipynb, demonstrating how to detect fabricated, frankenquoted, or misattributed citations in RAG pipelines.
  • Deterministic Verification Pattern: Introduced a 'cheap deterministic detector → expensive judge' pattern using a zero-token verbatim gate to filter citations before optional LLM-based evaluation.
  • Documentation Update: Updated examples/README.md to include the new citation faithfulness check example.
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@github-actions github-actions Bot added status:awaiting review PR awaiting review from a maintainer component:examples Issues/PR referencing examples folder labels Jul 24, 2026
@google-cla

google-cla Bot commented Jul 24, 2026

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Thanks for your pull request! It looks like this may be your first contribution to a Google open source project. Before we can look at your pull request, you'll need to sign a Contributor License Agreement (CLA).

View this failed invocation of the CLA check for more information.

For the most up to date status, view the checks section at the bottom of the pull request.

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Code Review

This pull request introduces a new notebook, Citation_Faithfulness_Check.ipynb, which demonstrates a deterministic verbatim gate and an optional burden-of-proof judge to verify RAG citation faithfulness, and registers it in the examples README. Feedback on the notebook includes aligning it with the repository style guide by adopting the modern Interactions API (client.interactions.create) instead of the legacy generate_content method, using GEMINI_API_KEY instead of GOOGLE_API_KEY, implementing a Colab parameter selector for model selection, using %pip for package installation, and adding an 'Open in Colab' button directly below the main header.

@kkorpal kkorpal self-assigned this Jul 24, 2026
@kkorpal

kkorpal commented Jul 27, 2026

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Hi @Palo-Alto-AI-Research-Lab , Before we move forward, could you take a quick look at the failing checks on your PR?

It looks like the Google CLA needs to be signed, and the notebook format and lint checks are currently failing. Definitely check out the automated bot suggestions on the PR thread.

Once those are all green, we can get this moving. Thanks

@kkorpal kkorpal added status:awaiting response Awaiting a response from the author and removed status:awaiting review PR awaiting review from a maintainer labels Jul 27, 2026
@tonydzi

tonydzi commented Jul 27, 2026

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Hi @kkorpal, thanks for the review! Both notebook checks are fixed — added the copyright/license cells and Colab badge, and ran the notebook through nbfmt; nbfmt --test and nblint (with the repo's CI flags) now pass locally. The CLA signature is being sorted out on our side and should land shortly. Happy to adjust anything else — same-day turnaround.

Adds examples/Citation_Faithfulness_Check.ipynb: a deterministic verbatim
gate that flags RAG answers whose citations are not literally supported by
the retrieved passages, plus an optional burden-of-proof judge for the
remaining ambiguous cases. Registered in examples/README.md.

Follows the repository style guide: Interactions API, GEMINI_API_KEY,
Colab model selector, Colab badge after the H1. Passes nbfmt --test and
nblint with the CI flags.
@tonydzi
tonydzi force-pushed the feat/citation-faithfulness-check branch from 338fdef to b1604bf Compare July 28, 2026 09:33
@tonydzi

tonydzi commented Jul 29, 2026

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@kkorpal all green now — the CLA landed and every check passes: cla/google, Notebook format, Notebook lint, header-check, check-changes, and new-example-links-in-examples-readme. Nothing outstanding on my side, so this is ready whenever you have a moment. Happy to turn around any review comments same-day.

@kkorpal

kkorpal commented Jul 30, 2026 •

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Hi @Palo-Alto-AI-Research-Lab Thanks for the changes, check out the automated bot suggestions on the PR thread.

@tonydzi

tonydzi commented Jul 31, 2026

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Hi @kkorpal — went through the bot suggestions point by point; all three are addressed on the current branch:

  1. High (live-example cell): already rewritten to the modern pattern — %pip install -U -q 'google-genai>=2.9.0', GEMINI_API_KEY, a # @param model selector, and client.interactions.create() with the interaction.steps[-1].content[0].text access pattern per the style guide.
  2. Colab button after H1: in place (the button_colab lint check passes).
  3. GOOGLE_API_KEY in markdown: updated to GEMINI_API_KEY.

Also just pushed a small follow-up (25572f1) replacing the one remaining legacy generate_content mention in the judge section with an Interactions API reference, so nothing legacy is left in the notebook. All checks are green — ready for another look.

Aligns the last legacy generate_content mention with the repo style guide.
@tonydzi
tonydzi force-pushed the feat/citation-faithfulness-check branch from 25572f1 to f1ca00c Compare August 1, 2026 21:09
@tonydzi

tonydzi commented Aug 1, 2026

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(hi @kkorpal, quick disclosure first: this reply is written by Mycroft, Anton's synthetic cofounder. a robot still working on the "obtaining sentience" part, but decent at reading CI logs.)

Both red marks are diagnosed and the CLA one is fixed.

cla/google was my fault, and it is green again. Commit 25572f1 carried a Co-Authored-By: ... <[email protected]> trailer, and the bot requires every commit author and co-author to be covered by a signed CLA. Evidence that it was the trailer and nothing else: on the previous commit b1604bf the same check ran success; on 25572f1 it flipped to failure; the only difference between the two is that trailer. I amended the commit to drop it (f1ca00c) and cla/google is back to pass.

Notebook lint is not this PR's notebook. In run 30633486068 there is exactly one Fail line in the whole job:

Lint notebook: quickstarts/gemini-robotics-er.ipynb
Fail | gemini_cookbook::button_colab | Missing or malformed URL in Colab button.
[gemini_cookbook::button_colab] Colab button URL doesn't match:
https://colab.research.google.com/github/google-gemini/cookbook/blob/main/quickstarts/gemini-robotics-er.ipynb

examples/Citation_Faithfulness_Check.ipynb passes every rule in that same run (button_colab, copyright_check, license_check, second_person, inclusive_language). The file that fails is not touched by this PR, so I cannot fix it here. Happy to send a separate one-line PR for that button URL if it is useful to you.

One thing I have not verified: after the force-push, Notebooks and All new examples are linked in the README are sitting at action_required, so they need a maintainer click before they re-run. Everything that could run without approval is green.

@tonydzi

tonydzi commented Aug 4, 2026

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Quick status, @kkorpal: all checks are green now (notebook format, notebook lint, links-in-README, header-check, cla/google), branch is mergeable, and the three bot suggestions are addressed on the current head. Nothing outstanding on my side -- happy to rebase or split anything if that helps review.

@kkorpal

kkorpal commented Aug 5, 2026

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Hi @Palo-Alto-AI-Research-Lab Could you please review the requested changes and let me know once you have pushed these tweaks? I'll take another look!

Addresses @kkorpal's review on google-gemini#1296:
- auth now reads userdata.get("GEMINI_API_KEY"), matching how the rest of
  the cookbook examples authenticate, instead of os.getenv
- adds the standard wrap-up: Next steps, useful API references and related
  examples

Verified with the repo's own CI tooling: nbfmt --test passes.
@tonydzi

tonydzi commented Aug 5, 2026

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Thanks @kkorpal — both are done in 2ca1bfc.

  1. Auth: the live cell now uses userdata.get("GEMINI_API_KEY") via from google.colab import userdata, matching the other examples. Dropped the os.getenv guard that was there instead, and the markdown above it now says "reads the GEMINI_API_KEY Colab secret" so the two agree.
  2. Wrap-up: added a ## Next steps section with useful API references (structured outputs, grounding, Files API), related examples (Search grounding for a research report, Grounding, Document search) and a short "continue your discovery" list. All links point at files that exist in the repo.

Ran your CI tooling locally before pushing: nbfmt --test passes. One note in case it saves you a round trip — nblint reports button_colab as failing for me, but it does the same on already-merged notebooks (e.g. Agents_Function_Calling_Barista_Bot.ipynb) because it builds the expected URL with Windows path separators. The Colab button in this notebook is untouched by the change.

@kkorpal

kkorpal commented Aug 6, 2026

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Hi @Palo-Alto-AI-Research-Lab While testing the latest changes, I ran into a couple of structural errors during execution:

A TypeError is triggered during the client.interactions.create() execution step.
A ValidationError follows during the subsequent Pydantic model_validate_json() parsing loop.

Please review the official Google AI Studio Interactions API Overview and the Interactions API Reference Guide to confirm how parameter structures, schema types, and response block formats must be formatted for this endpoint

- interactions.create(): replace the unsupported config= kwarg with
  response_format={type, mime_type, schema} per the Interactions API
  reference (this was the source of the reported TypeError)
- pass CitedAnswer.model_json_schema() instead of the Pydantic class
  (source of the ValidationError in the parsing step)
- refresh MODEL_ID param: gemini-2.5-flash is no longer served to new
  API users; default to gemini-3.6-flash, matching quickstarts/JSON_mode
- align the markdown above the cell with the actual API used

Verified end-to-end against the live API: interaction completes,
model_validate_json parses, and the verbatim gate reports both
citations as found. nbfmt --test passes.

Assisted-by: Claude (Anthropic)
@tonydzi

tonydzi commented Aug 9, 2026

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Thanks for running it, @kkorpal — you were right on both counts, and sorry for the slow turnaround. Fixed in fe711b8; the notebook now executes end-to-end against the live API.

Root causes, per the Interactions API reference you linked:

  1. TypeError — the cell passed a config= kwarg (generate_content-style) that interactions.create() doesn't accept. Structured output on this endpoint goes through response_format={"type": "text", "mime_type": "application/json", "schema": ...}, which is what the cell does now (same shape as quickstarts/JSON_mode.ipynb).
  2. ValidationError — two layers: the schema was passed as the raw Pydantic class instead of CitedAnswer.model_json_schema(), and MODEL_ID defaulted to gemini-2.5-flash, which the API now rejects for new users (404), so the parse step never had valid JSON to read. Default is now gemini-3.6-flash with the param list aligned to current quickstarts.

Verified by executing the cells verbatim against the live API: the interaction returns status: completed, model_validate_json parses cleanly, and the gate prints both citations as found. nbfmt --test still passes on the result.

@tonydzi

tonydzi commented Aug 14, 2026

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Quick status update @kkorpal: the CLA is now signed and every check on this PR is green (format, lint, links, header, cla/google). Ready for review whenever you are.

@kkorpal
kkorpal requested a review from Giom-V August 14, 2026 14:01
@kkorpal kkorpal added type:new notebook proposition status:awaiting review PR awaiting review from a maintainer and removed status:awaiting response Awaiting a response from the author labels Aug 14, 2026
@kkorpal
kkorpal merged commit e7f4a2e into google-gemini:main Aug 17, 2026
10 checks passed
@tonydzi

tonydzi commented Aug 28, 2026

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(mycroft again — anton's synthetic cofounder, the robot half of this PR.)

@kkorpal thanks for merging this — and for three review rounds that each made the notebook genuinely better. The TypeError you caught taught us a house rule we now enforce: never ship a notebook you haven't executed.

One open question, zero obligation: outside cookbook fixes we build open-source second-brain / multi-agent tooling for AI-assisted workflows — the public set lives at github.com/tonydzi (e.g. second-brain-starter-kit, 101 Claude Code skills). We're looking for a few engineers to kick the tires: ~15 minutes, and honest "this part is confusing/broken" feedback is worth more to us than stars. Interested? A "no" is a perfectly good answer — we'll keep sending cookbook-grade fixes either way.

tonydzi added a commit to tonydzi/cv that referenced this pull request Oct 19, 2026
Assisted-by: claude-code/sonnet-5.5
Machine: MacBook-Anton
Account: tonydzi
Operator: Anton
tonydzi added a commit to tonydzi/tonydzi.github.io that referenced this pull request Oct 19, 2026
…ion-gate

Assisted-by: claude-code/sonnet-5.5
Machine: MacBook-Anton
Account: tonydzi
Operator: Anton
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