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README.rst

GalaxyP - MaxQuant

Description

Wrapper for the MaxQuant version available in conda.

Updating

MaxQuant often changes the layout of its parameters file. So changes to the code are likely to be necessary when updating to a new version of MaxQuant. The init.py script can be used to initialize the tool with a new list of modifications or enzymes. From the tool dir run:

./init.py -m MODIFICATIONS.XML -e ENZYMES.XML

The location of these xml files usually is: ANACONDA_DIR/bin/conf/