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* bcl2fastq2: package update * package/bcl2fastq2: homepage fix * package/bcl2fastq2: glob fix * package/bcl2fastq2: code clean up * package/bcl2fastq2: code clean up #2
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Tensorflow has been added as an external package.
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* Add OpenMP variant to Umpire * Initial implementation of Axom package * Add Axom spack package and fix required dependencies * Fix overzealous tag replacement * Attempt to fix version error * Fix python version attempt #2 * Update raja and umpire * remove sys_type check * Address comments in axom package * Address Greg's comments * Fix flake8 * more flake8 * Simplify MPIEXEC and MPIEXEC_NUMPROC_FLAG * Fix typo * Revert back to slurm check, fix cuda_arch checks * Fix cuda_arch variant forwarding * Add cub variant * Add py-shroud * Address comments * Fix shroud path in axom * Fix merge conflict * Fix backwards if * Fix flake8 and add copyright * format for consistency
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Whenever attempting to use any ncurses functionality within cscope, a
page fault would result within the ncurses library.
Program received signal SIGSEGV, Segmentation fault.
0x00007ffff7fad3cf in termattrs_sp () from .../lib/libncursesw.so.6
(gdb) bt
#0 0x00007ffff7fad3cf in termattrs_sp () from .../lib/libncursesw.so.6
#1 0x00007ffff7faa794 in _nc_setupscreen_sp () from .../lib/libncursesw.so.6
#2 0x00007ffff7fa614c in newterm_sp () from .../lib/libncursesw.so.6
#3 0x00007ffff7fa65b9 in newterm () from .../lib/libncursesw.so.6
#4 0x00007ffff7fa2970 in initscr () from .../lib/libncursesw.so.6
#5 0x0000000000403dc2 in main (argc=<optimized out>, argv=0x7fffffffcea8) at main.c:574
This is due to a conflict between libtinfo.so and libtinfow.so. Both are
linked into cscope:
$ ldd $(which cscope)
/bin/bash: .../lib/libtinfo.so.6: no version information available (required by /bin/bash)
linux-vdso.so.1 (0x00007fff5dbcb000)
libncursesw.so.6 => .../lib/libncursesw.so.6 (0x00007f435cc69000)
libtinfo.so.6 => .../lib/libtinfo.so.6 (0x00007f435cc2c000)
libc.so.6 => /lib/x86_64-linux-gnu/libc.so.6 (0x00007f435ca29000)
libtinfow.so.6 => .../lib/libtinfow.so.6 (0x00007f435c9e8000)
/lib64/ld-linux-x86-64.so.2 (0x00007f435cca7000)
Specifically linking libtinfow.so instead of libtinfo.so resolves the
issue.
All instances of '...' above represent the path to the installed ncurses
for Spack.
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