tight_layout.get_renderer() breaks plotHeatmap with matplotlib 3.6 #1172
Description
tight_layout.get_renderer() was removed starting from matplotlib 3.6 so plotHeatmap doesn't plot with matplotlib 3.6 installed.
(base) [etekoglu@linuxsrv006 manualqc]$ plotHeatmap -m neg_investigation.mat.gz -o neg_investigation.pdf \
> --colorList "white,#043565" "white,#043565" "white,red" "white,red" "white,red" \
> --missingDataColor "white" \
> --samplesLabel "1" "2" "3" "4" "5" \
> --regionsLabel "R1" "R2" "R3" "R4" \
> --sortUsingSamples 1 \
> --heatmapHeight 15 \
> --heatmapWidth 5 \
> --zMin 0 0 0 0 0 --zMax 3 3 1.5 1.5 100 \
> --yMin -0.5 -0.5 0 0 0 --yMax 3 3 1.5 1.5 150
Samples used for ordering within each group: [0]
Traceback (most recent call last):
File "/home/etekoglu/miniconda3/bin/plotHeatmap", line 12, in <module>
main(args)
File "/home/etekoglu/miniconda3/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 874, in main
plotMatrix(hm,
File "/home/etekoglu/miniconda3/lib/python3.8/site-packages/deeptools/plotHeatmap.py", line 587, in plotMatrix
renderer = tl.get_renderer(fig)
AttributeError: module 'matplotlib.tight_layout' has no attribute 'get_renderer'
Downgrading back to matplotlib 3.5.3 fixes the issue.
My versions are:
- deepTools 3.5.1
- Python 3.8.13
- matplotlib 3.6.1