Tracer CLI tool

• Integrates efficiently with the Tracer backend
• Supports cross-platform compatibility to ensure broad usability across different operating systems commonly used in bioinformatics. 🌍
• Offers a suite of commands that handle key pipeline activities, ensuring a streamlined workflow for end-users. 💼

Example usage

• tracer --help
• tracer version
• tracer setup <API_KEY>
• tracer start
• tracer log --type warning QC mapping reads GC content below 53% threshold
• tracer tool BWA_MEM2 1.1

Todos

• ADD this download into a cURL script!!!!
• setup moves the binary automatically to /etc/tracer AND creates a directory there
• do not automatically print the results (api key save and path updated) for tracer setup <API_KEY>
• add to path as "tracer" instead of tracer
• Write tests for to communicate API pipeline steps: initialise pipeline, tool_used, log metric, custom message, alrt and finish pipeline run.
• Make it work locally
• Have CI/CD deployment pipeline
• Write a whole pipeline test

release mangement

• cargo release patch # for a patch release
• cargo release minor # for a minor release
• cargo release major # for a major release

Adding to path

• sudo mkdir -p /etc/tracer/
• sudo cp tracer /etc/tracer/tracer
• echo 'export PATH="$PATH:/etc/tracer"' >> ~/.bashrc
• echo 'alias tracer="tracer"' >> ~/.bashrc
• source ~/.bashrc
• tracer --version

One line installation

curl -sSL https://raw.githubusercontent.com/davincios/tracer-cli/master/install-tracer.sh | bash -s

How to use on Linux Ubuntu

• check the latest release and copy the link below with the lastest version

wget https://github.com/davincios/tracer-cli/releases/download/v0.0.22/tracer-x86_64-unknown-linux-gnu.tar.gz
tar -xzf tracer-x86_64-unknown-linux-gnu.tar.gz
./tracer setup <API_KEY>