Skip to content

Use SMARTS in XLogP instead of MCS UIT - #656

Merged
egonw merged 1 commit into
masterfrom
patch/xlog-cleanup
Feb 9, 2022
Merged

Use SMARTS in XLogP instead of MCS UIT#656
egonw merged 1 commit into
masterfrom
patch/xlog-cleanup

Conversation

@johnmay

@johnmay johnmay commented Jul 18, 2020

Copy link
Copy Markdown
Member

There are better LogP predictors (e.g. ALogP and JPLogP) - on the one hand I think hmm this could be useful to preserve for prosperity. However often the methods have very obvious coding bugs/misunderstandings.

Like here... the alpha amino pattern expected by the tests doesn't match proline.
Also works on explicit hydrogens - sigh. Anyways tests are parsing but that doesn't mean much so want to read the XLogP paper to see how faithful this is to the actual description.

@egonw
egonw marked this pull request as draft December 9, 2020 06:11
…s now clearer what each

pattern is and should run slightly faster since UIT is an MCS finding alogrithm instead of
a simple substructure match.
@johnmay
johnmay force-pushed the patch/xlog-cleanup branch from 9f1c7d2 to de8e6a8 Compare February 5, 2022 13:12
@johnmay
johnmay marked this pull request as ready for review February 5, 2022 13:13
@johnmay

johnmay commented Feb 5, 2022

Copy link
Copy Markdown
Member Author

Providing all checks okay - this is good to go. I never had time to lookup the paper but it is now cleaner

@johnmay johnmay changed the title WIP Use SMARTS in XLogP instead of MCS UIT Feb 5, 2022
@sonarqubecloud

sonarqubecloud Bot commented Feb 5, 2022

Copy link
Copy Markdown

Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 1 Code Smell

0.0% 0.0% Coverage
0.0% 0.0% Duplication

@egonw
egonw merged commit 30738c7 into master Feb 9, 2022
@johnmay
johnmay deleted the patch/xlog-cleanup branch February 9, 2022 15:04
Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment

Labels

None yet

Projects

None yet

Development

Successfully merging this pull request may close these issues.

2 participants