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Sgroup - #149

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johnmay wants to merge 6 commits into
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sgroup
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Sgroup#149
johnmay wants to merge 6 commits into
masterfrom
sgroup

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@johnmay

@johnmay johnmay commented Sep 4, 2015

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Adds preliminary support for Molfile Sgroups. Currently only round tripping and rendering. Rendering is limited to polymer brackets but I plan on adding the other rendering parts later this week.

Lots more todo but gives us a start. I've wanted to add this for some time and meeting Venkat at the ACS he said they couldn't use CDK in ChEBI because it didn't display Sgroups.

Molfile SRU example

… specific API (need interfaces) may be added in future.
…point,SBV=bond vector) we don't yet handle. We can store whether an Sgroup is expanded easily but the others will need additional classes. Since these only seem to be used by more complex (e.g. peptide) contractions they are ommitted for now.
@egonw

egonw commented Sep 6, 2015

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Never mind my comments... they are not requests. Code looks good. I will now try to apply it locally.

@egonw

egonw commented Sep 6, 2015

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Applied (rebased) and pushed.

@egonw egonw closed this Sep 6, 2015
@johnmay
johnmay deleted the sgroup branch September 6, 2015 17:45
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2 participants