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Broad Institute

Broad Institute of MIT and Harvard

1.2k followers
Cambridge, MA
http://www.broadinstitute.org/
@broadinstitute

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gatk gatk Public

Official code repository for GATK versions 4 and up

Java 1.9k 623
picard picard Public

A set of command line tools (in Java) for manipulating high-throughput sequencing (HTS) data and formats such as SAM/BAM/CRAM and VCF.

Java 1.1k 382
cromwell cromwell Public

Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

Scala 1.1k 381

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Showing 10 of 1472 repositories

gatk-sv Public
A structural variation pipeline for short-read sequencing

broadinstitute/gatk-sv’s past year of commit activity

Python 202 BSD-3-Clause 76 98 30 Updated Apr 18, 2026
ml4h Public

broadinstitute/ml4h’s past year of commit activity

Python 169 GPL-3.0 24 33 (1 issue needs help) 25 Updated Apr 18, 2026
GeneTEA Public
Gene-Term Enrichment Analysis (GeneTEA)

broadinstitute/GeneTEA’s past year of commit activity

Jupyter Notebook 10 BSD-2-Clause 2 0 6 Updated Apr 18, 2026
sendgrid-java Public Forked from sendgrid/sendgrid-java
Broad Institute fork of the Official Twilio SendGrid Led, Community Driven Java API Library

broadinstitute/sendgrid-java’s past year of commit activity

Java 0 MIT 446 0 2 Updated Apr 18, 2026
long-read-pipelines Public
Long read production pipelines

broadinstitute/long-read-pipelines’s past year of commit activity

Jupyter Notebook 151 BSD-3-Clause 25 95 (2 issues need help) 25 Updated Apr 18, 2026
warp Public
Warp Analysis Research Pipelines

broadinstitute/warp’s past year of commit activity

WDL 225 BSD-3-Clause 115 7 20 Updated Apr 18, 2026
jx Public
JUMP eXplore — skill library and marimo notebook catalog for working with JUMP Cell Painting data

broadinstitute/jx’s past year of commit activity

Python 3 BSD-3-Clause 0 0 0 Updated Apr 17, 2026
cromwell Public
Scientific workflow engine designed for simplicity & scalability. Trivially transition between one off use cases to massive scale production environments

broadinstitute/cromwell’s past year of commit activity

Scala 1,063 BSD-3-Clause 381 762 49 Updated Apr 17, 2026
cellpainting-gallery-metadata Public
Project to create metadata that is harmonized across the Cell Painting Gallery

broadinstitute/cellpainting-gallery-metadata’s past year of commit activity

Jupyter Notebook 3 BSD-3-Clause 0 4 0 Updated Apr 17, 2026
dig-dug-portal Public

broadinstitute/dig-dug-portal’s past year of commit activity

Vue 2 BSD-3-Clause 2 0 1 Updated Apr 17, 2026

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