Python implementation and extension of SynDNA ("a Synthetic DNA Spike-in Method for Absolute Quantification of Shotgun Metagenomic Sequencing", Zaramela et al., mSystems 2022

Jupyter notebooks to assist with sample processing

The Microsetta participant facing user interface

A private microservice to support The Microsetta Initiative

Emperor a tool for the analysis and visualization of large microbial ecology datasets

The Biological Observation Matrix (BIOM) Format Project

Gemelli is a tool box for running Robust Aitchison PCA (RPCA), Joint Robust Aitchison PCA (Joint-RPCA), TEMPoral TEnsor Decomposition (TEMPTED), and Compositional Tensor Factorization (CTF) on sparse compositional omics datasets.