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README.md

SeqPrep Tool Documentation

Caution

This is a modified version of the 1.2 release. Made for use with the MGnify pipeline.

Overview

SeqPrep is a bioinformatics tool primarily used for processing paired-end Illumina reads. It excels in merging overlapping reads and trimming adapter sequences, making it a valuable asset in genomic sequence analysis. Its efficient handling of paired-end data ensures high-quality preparation for downstream analysis.

Key Features

  • Read Merging: Seamlessly merges overlapping paired-end Illumina reads into longer, single reads.
  • Adapter Trimming: Efficiently trims adapter sequences from read ends to improve data quality.
  • Quality Control: Offers options for quality score cutoff and minimum read length, enhancing the integrity of output data.

Usage

For a detailed tutorial on how to use SeqPrep, please refer to the SeqPrep Tutorial.